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annotate mlp.py @ 221:58e17421c69c

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tester on iterator consistency now triggers a bug in dataset, linked to the combination of minibatch and slicing
author Thierry Bertin-Mahieux <bertinmt@iro.umontreal.ca>
date Fri, 23 May 2008 14:07:53 -0400
parents d1359de1ea13
children
rev   line source
132
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Joseph Turian <turian@gmail.com>
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1 """
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Joseph Turian <turian@gmail.com>
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2 A straightforward classicial feedforward
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Joseph Turian <turian@gmail.com>
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3 one-hidden-layer neural net, with L2 regularization.
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4 This is one of the simplest example of L{Learner}, and illustrates
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5 the use of theano.
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6 """
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7
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8 from learner import *
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9 from theano import tensor as t
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10 from nnet_ops import *
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11 import math
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12 from misc import *
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13
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14 def function(inputs, outputs, linker='c&py'):
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15 return theano.function(inputs, outputs, unpack_single=False,linker=linker)
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16
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17 def randshape(*shape): return (numpy.random.rand(*shape) -0.5) * 0.001
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18
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19 class ManualNNet(object):
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20 def __init__(self, ninputs, nhid, nclass, lr, nepochs,
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21 linker='c&yp',
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22 hidden_layer=None):
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23 class Vars:
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24 def __init__(self, lr, l2coef=0.0):
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25 lr = t.constant(lr)
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26 l2coef = t.constant(l2coef)
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27 input = t.matrix('input') # n_examples x n_inputs
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28 target = t.ivector('target') # n_examples x 1
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29 W2 = t.matrix('W2')
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30 b2 = t.vector('b2')
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31
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32 if hidden_layer:
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33 hid, hid_params, hid_ivals, hid_regularization = hidden_layer(input)
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34 else:
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35 W1 = t.matrix('W1')
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36 b1 = t.vector('b1')
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37 hid = t.tanh(b1 + t.dot(input, W1))
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38 hid_params = [W1, b1]
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39 hid_regularization = l2coef * t.sum(W1*W1)
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40 hid_ivals = [randshape(ninputs, nhid), randshape(nhid)]
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41
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42 params = [W2, b2] + hid_params
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43 ivals = [randshape(nhid, nclass), randshape(nclass)]\
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44 + hid_ivals
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45 nll, predictions = crossentropy_softmax_1hot( b2 + t.dot(hid, W2), target)
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46 regularization = l2coef * t.sum(W2*W2) + hid_regularization
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47 output_class = t.argmax(predictions,1)
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48 loss_01 = t.neq(output_class, target)
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49 g_params = t.grad(nll + regularization, params)
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50 new_params = [t.sub_inplace(p, lr * gp) for p,gp in zip(params, g_params)]
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51 self.__dict__.update(locals()); del self.self
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52 self.nhid = nhid
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53 self.nclass = nclass
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54 self.nepochs = nepochs
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55 self.v = Vars(lr)
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56 self.params = None
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57
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58 def update(self, trainset):
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59 params = self.v.ivals
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60 update_fn = function(
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61 [self.v.input, self.v.target] + self.v.params,
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62 [self.v.nll] + self.v.new_params)
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63 for i in xrange(self.nepochs):
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64 for input, target in trainset.minibatches(['input', 'target'],
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65 minibatch_size=min(32, len(trainset))):
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66 dummy = update_fn(input, target[:,0], *params)
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67 if 0: print dummy[0] #the nll
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68 return self.use
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69 __call__ = update
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70
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71 def use(self, dset,
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72 output_fieldnames=['output_class'],
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73 test_stats_collector=None,
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74 copy_inputs=False,
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75 put_stats_in_output_dataset=True,
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76 output_attributes=[]):
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77 inputs = [self.v.input, self.v.target] + self.v.params
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78 fn = function(inputs, [getattr(self.v, name) for name in output_fieldnames])
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79 target = dset.fields()['target'] if ('target' in dset.fields()) else numpy.zeros((1,1),dtype='int64')
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80 return ApplyFunctionDataSet(dset,
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81 lambda input, target: fn(input, target[:,0], *self.v.ivals),
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82 output_fieldnames)
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83
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84
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85 class OneHiddenLayerNNetClassifier(OnlineGradientTLearner):
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86 """
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87 Implement a straightforward classicial feedforward
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88 one-hidden-layer neural net, with L2 regularization.
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89
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90 The predictor parameters are obtained by minibatch/online gradient descent.
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91 Training can proceed sequentially (with multiple calls to update with
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92 different disjoint subsets of the training sets).
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93
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94 Hyper-parameters:
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95 - L2_regularizer
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96 - learning_rate
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97 - n_hidden
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98
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99 For each (input_t,output_t) pair in a minibatch,::
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100
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101 output_activations_t = b2+W2*tanh(b1+W1*input_t)
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102 output_t = softmax(output_activations_t)
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103 output_class_t = argmax(output_activations_t)
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104 class_error_t = 1_{output_class_t != target_t}
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105 nll_t = -log(output_t[target_t])
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106
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107 and the training criterion is::
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108
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109 loss = L2_regularizer*(||W1||^2 + ||W2||^2) + sum_t nll_t
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110
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111 The parameters are [b1,W1,b2,W2] and are obtained by minimizing the loss by
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112 stochastic minibatch gradient descent::
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113
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114 parameters[i] -= learning_rate * dloss/dparameters[i]
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115
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116 The fields and attributes expected and produced by use and update are the following:
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117
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118 - Input and output fields (example-wise quantities):
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119
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120 - 'input' (always expected by use and update)
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121 - 'target' (optionally expected by use and always by update)
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122 - 'output' (optionally produced by use)
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123 - 'output_class' (optionally produced by use)
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124 - 'class_error' (optionally produced by use)
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125 - 'nll' (optionally produced by use)
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126
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127 - optional attributes (optionally expected as input_dataset attributes)
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128 (warning, this may be dangerous, the 'use' method will use those provided in the
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129 input_dataset rather than those learned during 'update'; currently no support
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130 for providing these to update):
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131
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132 - 'L2_regularizer'
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133 - 'b1'
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134 - 'W1'
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135 - 'b2'
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136 - 'W2'
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137 - 'parameters' = [b1, W1, b2, W2]
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138 - 'regularization_term'
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139
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140 """
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141 def __init__(self,n_hidden,n_classes,learning_rate,max_n_epochs,L2_regularizer=0,init_range=1.,n_inputs=None,minibatch_size=None,linker='c|py'):
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142 self._n_inputs = n_inputs
121
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143 self._n_outputs = n_classes
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144 self._n_hidden = n_hidden
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145 self._init_range = init_range
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146 self._max_n_epochs = max_n_epochs
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147 self._minibatch_size = minibatch_size
121
2ca8dccba270 debugging mlp.py
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148 self.learning_rate = learning_rate # this is the float
134
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149 self.L2_regularizer = L2_regularizer
121
2ca8dccba270 debugging mlp.py
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150 self._learning_rate = t.scalar('learning_rate') # this is the symbol
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151 self._input = t.matrix('input') # n_examples x n_inputs
183
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152 self._target = t.lmatrix('target') # n_examples x 1
134
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153 self._target_vector = self._target[:,0]
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154 self._L2_regularizer = t.scalar('L2_regularizer')
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155 self._W1 = t.matrix('W1')
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156 self._W2 = t.matrix('W2')
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157 self._b1 = t.row('b1')
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158 self._b2 = t.row('b2')
126
4efe6d36c061 minor edits
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diff changeset
159 self._regularization_term = self._L2_regularizer * (t.sum(self._W1*self._W1) + t.sum(self._W2*self._W2))
121
2ca8dccba270 debugging mlp.py
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diff changeset
160 self._output_activations =self._b2+t.dot(t.tanh(self._b1+t.dot(self._input,self._W1.T)),self._W2.T)
180
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diff changeset
161 self._nll,self._output = crossentropy_softmax_1hot(self._output_activations,self._target_vector)
155
ae5651a3696b new argmax calling convention
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parents: 134
diff changeset
162 self._output_class = t.argmax(self._output,1)
134
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diff changeset
163 self._class_error = t.neq(self._output_class,self._target_vector)
121
2ca8dccba270 debugging mlp.py
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parents: 118
diff changeset
164 self._minibatch_criterion = self._nll + self._regularization_term / t.shape(self._input)[0]
183
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parents: 182
diff changeset
165 OnlineGradientTLearner.__init__(self, linker = linker)
121
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diff changeset
166
111
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167 def attributeNames(self):
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168 return ["parameters","b1","W2","b2","W2", "L2_regularizer","regularization_term"]
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169
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170 def parameterAttributes(self):
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171 return ["b1","W1", "b2", "W2"]
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172
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173 def updateMinibatchInputFields(self):
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174 return ["input","target"]
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175
180
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176 def updateMinibatchInputAttributes(self):
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177 return OnlineGradientTLearner.updateMinibatchInputAttributes(self)+["L2_regularizer"]
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178
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179 def updateEndOutputAttributes(self):
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180 return ["regularization_term"]
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181
118
d0a1bd0378c6 Finished draft of OneHiddenLayerNNetClassifier to debut learner.py
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182 def lossAttribute(self):
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183 return "minibatch_criterion"
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184
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185 def defaultOutputFields(self, input_fields):
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186 output_fields = ["output", "output_class",]
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187 if "target" in input_fields:
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188 output_fields += ["class_error", "nll"]
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189 return output_fields
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190
182
4afb41e61fcf strange bug in linker obtained by 'python test_mlp.py'
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parents: 180
diff changeset
191 def updateMinibatch(self,minibatch):
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diff changeset
192 MinibatchUpdatesTLearner.updateMinibatch(self,minibatch)
183
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parents: 182
diff changeset
193 #print self.nll
182
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diff changeset
194
111
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195 def allocate(self,minibatch):
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196 minibatch_n_inputs = minibatch["input"].shape[1]
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197 if not self._n_inputs:
118
d0a1bd0378c6 Finished draft of OneHiddenLayerNNetClassifier to debut learner.py
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parents: 111
diff changeset
198 self._n_inputs = minibatch_n_inputs
134
3f4e5c9bdc5e Fixes to ApplyFunctionDataSet and other things to make learner and mlp work
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parents: 133
diff changeset
199 self.b1 = numpy.zeros((1,self._n_hidden))
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diff changeset
200 self.b2 = numpy.zeros((1,self._n_outputs))
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201 self.forget()
118
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diff changeset
202 elif self._n_inputs!=minibatch_n_inputs:
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diff changeset
203 # if the input changes dimension on the fly, we resize and forget everything
111
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204 self.forget()
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205
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206 def forget(self):
118
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parents: 111
diff changeset
207 if self._n_inputs:
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diff changeset
208 r = self._init_range/math.sqrt(self._n_inputs)
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parents: 111
diff changeset
209 self.W1 = numpy.random.uniform(low=-r,high=r,
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parents: 111
diff changeset
210 size=(self._n_hidden,self._n_inputs))
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parents: 111
diff changeset
211 r = self._init_range/math.sqrt(self._n_hidden)
d0a1bd0378c6 Finished draft of OneHiddenLayerNNetClassifier to debut learner.py
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parents: 111
diff changeset
212 self.W2 = numpy.random.uniform(low=-r,high=r,
d0a1bd0378c6 Finished draft of OneHiddenLayerNNetClassifier to debut learner.py
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parents: 111
diff changeset
213 size=(self._n_outputs,self._n_hidden))
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parents: 111
diff changeset
214 self.b1[:]=0
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diff changeset
215 self.b2[:]=0
133
b4657441dd65 Corrected typos
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parents: 132
diff changeset
216 self._n_epochs=0
111
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diff changeset
217
133
b4657441dd65 Corrected typos
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parents: 132
diff changeset
218 def isLastEpoch(self):
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parents: 132
diff changeset
219 self._n_epochs +=1
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parents: 132
diff changeset
220 return self._n_epochs>=self._max_n_epochs
111
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221
180
2698c0feeb54 mlp seems to work!
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parents: 179
diff changeset
222 def debug_updateMinibatch(self,minibatch):
178
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 155
diff changeset
223 # make sure all required fields are allocated and initialized
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 155
diff changeset
224 self.allocate(minibatch)
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 155
diff changeset
225 input_attributes = self.names2attributes(self.updateMinibatchInputAttributes())
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parents: 155
diff changeset
226 input_fields = minibatch(*self.updateMinibatchInputFields())
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parents: 155
diff changeset
227 print 'input attributes', input_attributes
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parents: 155
diff changeset
228 print 'input fields', input_fields
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parents: 155
diff changeset
229 results = self.update_minibatch_function(*(input_attributes+input_fields))
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parents: 155
diff changeset
230 print 'output attributes', self.updateMinibatchOutputAttributes()
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parents: 155
diff changeset
231 print 'results', results
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 155
diff changeset
232 self.setAttributes(self.updateMinibatchOutputAttributes(),
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 155
diff changeset
233 results)
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 155
diff changeset
234
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 155
diff changeset
235 if 0:
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 155
diff changeset
236 print 'n0', self.names2OpResults(self.updateMinibatchOutputAttributes()+ self.updateMinibatchInputFields())
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 155
diff changeset
237 print 'n1', self.names2OpResults(self.updateMinibatchOutputAttributes())
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 155
diff changeset
238 print 'n2', self.names2OpResults(self.updateEndInputAttributes())
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 155
diff changeset
239 print 'n3', self.names2OpResults(self.updateEndOutputAttributes())
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 155
diff changeset
240