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annotate doc/v2_planning/arch_src/plugin_JB.py @ 1321:ebcb76b38817

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tinyimages - added main script to whiten patches
author James Bergstra <bergstrj@iro.umontreal.ca>
date Sun, 10 Oct 2010 13:43:53 -0400
parents 9fac28d80fb7
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rev   line source
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1 """plugin_JB - draft of potential library architecture using iterators
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2
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3 This strategy makes use of a simple imperative language whose statements are python function
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4 calls to create learning algorithms that can be manipulated and executed in several desirable
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5 ways.
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6
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7 The training procedure for a PCA module is easy to express:
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8
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9 # allocate the relevant modules
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10 dataset = Dataset(numpy.random.RandomState(123).randn(13,1))
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11 pca = PCA_Analysis()
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12 pca_batchsize=1000
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14 reg = Registers()
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15
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16 # define the control-flow of the algorithm
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17 train_pca = SEQ([
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18 REPEAT(pca_batchsize, CALL(dataset.next, store_to=reg('x'))),
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19 CALL(pca.analyze, reg('x'))])
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20
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21 # run the program
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22 train_pca.run()
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23
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24 The CALL, SEQ, and REPEAT are control-flow elements. The control-flow elements I
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25 defined so far are:
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26
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27 - CALL - a basic statement, just calls a python function
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28 - SEQ - a sequence of elements to run in order
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29 - REPEAT - do something N times (and return None or maybe the last CALL?)
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30 - LOOP - do something an infinite number of times
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31 - CHOOSE - like a switch statement (should rename to SWITCH)
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32 - WEAVE - interleave execution of multiple control-flow elements
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33 - POPEN - launch a process and return its status when it's complete
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34 - PRINT - a shortcut for CALL(print_obj)
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35 - SPAWN - run a program fragment asynchronously in another process
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36
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37
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38 We don't have many requirements per-se for the architecture, but I think this design respects
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39 and realizes all of them.
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40 The advantages of this approach are:
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41
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42 - algorithms (including partially run ones) are COPYABLE, and SERIALIZABLE
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43
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44 - algorithms can be executed without seizing control of the python process (the run()
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45 method does this, but if you look inside it you'll see it's a simple for loop)
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46
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47 - it is easy to execute an algorithm step by step in a main loop that also checks for
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48 network or filesystem events related to e.g. job management.
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49
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50 - the library can provide learning algorithms via control-flow templates, and the user can
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51 edit them (with search/replace calls) to include HOOKS, and DIAGNOSTIC plug-in
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52 functionality
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53
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54 e.g. prog.find(CALL(cd1_update, layer=layer1)).replace_with(
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55 SEQ([CALL(cd1_update, layer=layer1), CALL(my_debugfn)]))
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56
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57 - user can print the 'program code' of an algorithm built from library pieces
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58
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59 - program can be optimized automatically.
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60
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61 - e.g. BUFFER(N, CALL(dataset.next)) could be replaced if dataset.next implements the
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62 right attribute/protocol for 'bufferable' or something.
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63
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64 - e.g. SEQ([a,b,c,d]) could be compiled to a single CALL to a Theano-compiled function
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65 if a, b, c, and d are calls to callable objects that export something like a
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66 'theano_SEQ' interface
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67
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68
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69 """
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70
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71 __license__ = 'TODO'
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72 __copyright__ = 'TODO'
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73
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74 import cPickle, copy, os, subprocess, sys, time
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75 import numpy
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76
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77 ####################################################
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78 # CONTROL-FLOW CONSTRUCTS
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79
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80 class INCOMPLETE:
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81 """Return value for Element.step"""
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82
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83 class ELEMENT(object):
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84 """
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85 Base class for control flow elements (e.g. CALL, REPEAT, etc.)
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86
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87 The design is that every element has a driver, that is another element, or the iterator
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88 implementation in the ELEMENT class.
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89
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90 the driver calls start when entering a new control element
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91 - this would be called once per e.g. outer loop iteration
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92
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93 the driver calls step to advance the control element
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94 - which returns INCOMPLETE
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95 - which returns any other object to indicate completion
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96 """
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97
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98 # subclasses should override these methods:
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99 def start(self):
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100 pass
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101 def step(self):
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102 pass
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103
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104 # subclasses should typically not override these:
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105 def run(self, n_steps=float('inf')):
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106 self.start()
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107 i = 0
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108 r = self.step()
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109 while r is INCOMPLETE:
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110 i += 1
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111 #TODO make sure there is not an off-by-one error
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112 if i > n_steps:
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113 break
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114 r = self.step()
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115 return r
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116
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117 class BUFFER_REPEAT(ELEMENT):
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118 """
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119 Accumulate a number of return values into one list / array.
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120
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121 The source of return values `src` is a control element that will be restarted repeatedly in
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122 order to fulfil the requiement of gathering N samples.
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123
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124 TODO: support accumulating of tuples of arrays
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125 """
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126 def __init__(self, N, src, storage=None):
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127 """
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128 TODO: use preallocated `storage`
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129 """
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130 self.N = N
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131 self.n = 0
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132 self.src = src
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133 self.storage = storage
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parents:
diff changeset
134 self.src.start(None)
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parents:
diff changeset
135 if self.storage != None:
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parents:
diff changeset
136 raise NotImplementedError()
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parents:
diff changeset
137 def start(self, arg):
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parents:
diff changeset
138 self.buf = [None] * self.N
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parents:
diff changeset
139 self.n = 0
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parents:
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140 self.finished = False
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parents:
diff changeset
141 def step(self):
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parents:
diff changeset
142 assert not self.finished
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143 r = self.src.step()
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parents:
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144 if r is INCOMPLETE:
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parents:
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145 return r
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parents:
diff changeset
146 self.src.start(None) # restart our stream
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147 self.buf[self.n] = r
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148 self.n += 1
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parents:
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149 if self.n == self.N:
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150 self.finished = True
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parents:
diff changeset
151 return self.buf
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parents:
diff changeset
152 else:
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parents:
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153 return INCOMPLETE
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parents:
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154 assert 0
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155
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156 class CALL(ELEMENT):
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parents:
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157 """
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parents:
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158 Control flow terminal - call a python function or method.
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159
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160 Returns the return value of the call.
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parents:
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161 """
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parents:
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162 def __init__(self, fn, *args, **kwargs):
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163 self.fn = fn
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164 self.args = args
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165 self.kwargs=kwargs
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166 def start(self):
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167 self.finished = False
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168 return self
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parents:
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169 def step(self):
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parents:
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170 assert not self.finished
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171 self.finished = True
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172 fn_rval = self.fn(*self.lookup_args(), **self.lookup_kwargs())
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parents: 1212
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173 if '_set' in self.kwargs:
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174 self.kwargs['_set'].set(fn_rval)
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175 def __getstate__(self):
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parents:
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176 rval = dict(self.__dict__)
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parents:
diff changeset
177 if type(self.fn) is type(self.step): #instancemethod
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parents:
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178 fn = rval.pop('fn')
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parents:
diff changeset
179 rval['i fn'] = fn.im_func, fn.im_self, fn.im_class
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parents:
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180 return rval
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
181 def __setstate__(self, dct):
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
182 if 'i fn' in dct:
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parents:
diff changeset
183 dct['fn'] = type(self.step)(*dct.pop('i fn'))
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parents:
diff changeset
184 self.__dict__.update(dct)
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parents:
diff changeset
185
1219
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parents: 1212
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186 def lookup_args(self):
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diff changeset
187 rval = []
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
188 for a in self.args:
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
189 if isinstance(a, Register):
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
190 rval.append(a.get())
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parents: 1212
diff changeset
191 else:
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
192 rval.append(a)
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James Bergstra <bergstrj@iro.umontreal.ca>
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diff changeset
193 return rval
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
194 def lookup_kwargs(self):
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195 rval = {}
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
196 for k,v in self.kwargs.iteritems():
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
197 if k == '_set':
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
198 continue
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parents: 1212
diff changeset
199 if isinstance(v, Register):
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parents: 1212
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200 rval[k] = v.get()
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parents: 1212
diff changeset
201 else:
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
202 rval[k] = v
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
203 return rval
1212
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parents:
diff changeset
204
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
205 def CHOOSE(which, options):
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
206 """
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
207 Execute one out of a number of optional control flow paths
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
208 """
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
209 raise NotImplementedError()
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parents:
diff changeset
210
1219
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
211 def LOOP(element):
1212
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
212 #TODO: implement a true infinite loop
1219
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
213 return REPEAT(sys.maxint, element)
1212
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parents:
diff changeset
214
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
215 class REPEAT(ELEMENT):
1219
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
216 def __init__(self, N, element, counter=None):
1212
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parents:
diff changeset
217 self.N = N
1219
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
218 if not isinstance(element, ELEMENT):
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
219 raise TypeError(element)
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
220 self.element = element
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
221 self.counter = counter
1212
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
222
478bb1f8215c plugin_JB - added SPAWN control element and demo program
James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
223 #TODO: check for N being callable
1219
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
224 def start(self):
1212
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
225 self.n = 0 #loop iteration
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
226 self.finished = False
1219
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
227 self.element.start()
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
228 if self.counter:
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
229 self.counter.set(0)
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parents: 1212
diff changeset
230
1212
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parents:
diff changeset
231 def step(self):
478bb1f8215c plugin_JB - added SPAWN control element and demo program
James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
232 assert not self.finished
1219
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
233 r = self.element.step()
1212
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
234 if r is INCOMPLETE:
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
235 return INCOMPLETE
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
236 self.n += 1
1219
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
237 if self.counter:
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
238 self.counter.set(self.n)
1212
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
239 if self.n < self.N:
1219
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
240 self.element.start()
1212
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
241 return INCOMPLETE
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
242 else:
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
243 self.finished = True
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James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
244 return r
478bb1f8215c plugin_JB - added SPAWN control element and demo program
James Bergstra <bergstrj@iro.umontreal.ca>
parents:
diff changeset
245
1219
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
246 class SEQ(ELEMENT):
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
247 def __init__(self, elements):
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James Bergstra <bergstrj@iro.umontreal.ca>
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diff changeset
248 self.elements = list(elements)
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diff changeset
249 def start(self):
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
250 if len(self.elements):
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parents: 1212
diff changeset
251 self.elements[0].start()
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James Bergstra <bergstrj@iro.umontreal.ca>
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diff changeset
252 self.pos = 0
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
253 self.finished = False
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
254 def step(self):
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
255 if self.pos == len(self.elements):
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
256 self.finished=True
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
257 return
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
258 r = self.elements[self.pos].step()
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
259 if r is INCOMPLETE:
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
260 return r
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
261 self.pos += 1
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
262 if self.pos < len(self.elements):
9fac28d80fb7 plugin_JB - removed FILT and BUFFER_REPEAT, added Registers
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
263 self.elements[self.pos].start()
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James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
264 return INCOMPLETE
1212
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265
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266 class WEAVE(ELEMENT):
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267 """
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268 Interleave execution of a number of elements.
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269
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270 TODO: allow a schedule (at least relative frequency) of elements from each program
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271 """
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272 def __init__(self, n_required, elements):
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273 self.elements = elements
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274 if n_required == -1:
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275 self.n_required = len(elements)
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276 else:
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277 self.n_required = n_required
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278 def start(self):
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279 for el in self.elements:
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280 el.start()
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281 self.elem_finished = [0] * len(self.elements)
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282 self.idx = 0
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283 self.finished= False
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284 def step(self):
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285 assert not self.finished # if this is triggered, we have a broken driver
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286
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287 #start with this check in case there were no elements
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288 # it's possible for the number of finished elements to exceed the threshold
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289 if sum(self.elem_finished) >= self.n_required:
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290 self.finished = True
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291 return None
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292
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293 # step the active element
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294 r = self.elements[self.idx].step()
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295
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296 if r is not INCOMPLETE:
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297 self.elem_finished[self.idx] = True
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298
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299 # check for completion
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300 if sum(self.elem_finished) >= self.n_required:
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301 self.finished = True
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302 return None
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303
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304 # advance to the next un-finished element
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305 self.idx = (self.idx+1) % len(self.elements)
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306 while self.elem_finished[self.idx]:
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307 self.idx = (self.idx+1) % len(self.elements)
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308
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309 return INCOMPLETE
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310
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311 class POPEN(ELEMENT):
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312 def __init__(self, args):
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313 self.args = args
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314 def start(self):
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315 self.p = subprocess.Popen(self.args)
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316 def step(self):
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317 r = self.p.poll()
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318 if r is None:
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319 return INCOMPLETE
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320 return r
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321
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322 def PRINT(obj):
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323 return CALL(print_obj, obj)
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324
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325 class SPAWN(ELEMENT):
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326 SUCCESS = 0
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327 def __init__(self, data, prog):
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328 self.data = data
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329 self.prog = prog
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330 def start(self):
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331 # pickle the (data, prog) pair
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332 s = cPickle.dumps((self.data, self.prog))
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333
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334 # call python with a stub function that
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335 # unpickles the data, prog pair and starts running the prog
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336 self.rpipe, wpipe = os.pipe()
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337 code = 'import sys, plugin_JB; sys.exit(plugin_JB.SPAWN._main(%i))'%wpipe
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338 self.p = subprocess.Popen(
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339 ['python', '-c', code],
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340 stdin=subprocess.PIPE)
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341 # send the data and prog to the other process
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342 self.p.stdin.write(s)
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343 self.finished= False
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344
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345 #TODO: send over tgz of the modules this code needs
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346
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347 #TODO: When the client process is on a different machine, negotiate with the client
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348 # process to determine which modules it needs, and send over the code for pure python
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349 # ones. Make sure versions match for non-pure python ones.
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350
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351 def step(self):
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352 assert not self.finished
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353 r = self.p.poll()
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354 if r is None:
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355 return INCOMPLETE # typical exit case
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356 self.finished = True
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357 if r != self.SUCCESS:
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358 print "UH OH", r # TODO - ???
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359 rfile = os.fdopen(self.rpipe)
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360 # recv the revised of the data dictionary
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361 data = cPickle.load(rfile)
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362 # modify the data dict in-place
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363 # for new values to be visible to other components
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364 self.data.update(data)
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365 rfile.close()
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366 #TODO: return something meaningful? like r?
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367 return None
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368
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369 @staticmethod
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370 def _main(wpipe):
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diff changeset
371 #TODO: unpack and install tgz of the modules this code needs
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diff changeset
372 data, prog = cPickle.load(sys.stdin)
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373 rval = prog.run()
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374 os.write(wpipe, cPickle.dumps(data))
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375 return SPAWN.SUCCESS
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376 #os.close(wpipe)
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377
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378 class Register(object):
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379 def __init__(self, registers, key):
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380 self.registers = registers
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381 self.key = key
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382 def set(self, val):
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383 self.registers[self.key] = val
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384 def get(self):
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385 return self.registers[self.key]
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386 class Registers(dict):
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387 def __call__(self, key):
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388 return Register(self, key)
1212
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389
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390 def print_obj(obj):
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parents:
diff changeset
391 print obj
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392 def print_obj_attr(obj, attr):
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393 print getattr(obj, attr)
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394 def no_op(*args, **kwargs):
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parents:
diff changeset
395 pass
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parents:
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396
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397 def importable_fn(d):
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diff changeset
398 d['new key'] = len(d)
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399
1219
9fac28d80fb7 plugin_JB - removed FILT and BUFFER_REPEAT, added Registers
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
400
9fac28d80fb7 plugin_JB - removed FILT and BUFFER_REPEAT, added Registers
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
401 if __name__ == '__main__':
9fac28d80fb7 plugin_JB - removed FILT and BUFFER_REPEAT, added Registers
James Bergstra <bergstrj@iro.umontreal.ca>
parents: 1212
diff changeset
402 print 'this is the library file, run "python plugin_JB_main.py"'