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annotate pylearn/datasets/utlc.py @ 1432:8661f8ad407a

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Add a cast in the chain of transformation of initial data set
author Pascal Lamblin <lamblinp@iro.umontreal.ca>
date Mon, 14 Feb 2011 19:27:37 -0500
parents dce602150b5f
children 08beb6f28809
rev   line source
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1 """
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2 user should use the load _ndarray_dataset or load_sparse_dataset function
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3
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4 See the file ${PYLEARN_DATA_ROOT}/UTCL/README for detail on the datasets.
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5
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6 See the end of this file for an example.
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7 """
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8
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9 import cPickle
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10 import gzip
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11 import os
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12
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13 import numpy
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14 import theano
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15
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16 import pylearn.io.filetensor as ft
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17 import config
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18
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19 def load_ndarray_dataset(name, normalize=True, transfer=False,
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20 normalize_on_the_fly=False, randomize_valid=False,
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21 randomize_test=False):
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22 """ Load the train,valid,test data for the dataset `name`
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23 and return it in ndarray format.
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24
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25 We suppose the data was created with ift6266h11/pretraitement/to_npy.py that
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26 shuffle the train. So the train should already be shuffled.
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27
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28 :param normalize: If True, we normalize the train dataset
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29 before returning it
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30 :param transfer: If True also return the transfer label(currently only available for ule)
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31 :param normalize_on_the_fly: If True, we return a Theano Variable that will give
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32 as output the normalized value. If the user only
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33 take a subtensor of that variable, Theano optimization
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34 should make that we will only have in memory the subtensor
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35 portion that is computed in normalized form. We store
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36 the original data in shared memory in its original dtype.
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37
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38 This is usefull to have the original data in its original
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39 dtype in memory to same memory. Especialy usefull to
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40 be able to use rita and harry with 1G per jobs.
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41 :param randomize_valid: Do we randomize the order of the valid set?
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42 We always use the same random order
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43 If False, return in the same order as downloaded on the web
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44 :param randomize_test: Do we randomize the order of the test set?
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45 We always use the same random order
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46 If False, return in the same order as downloaded on the web
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47 """
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48 assert not (normalize and normalize_on_the_fly), "Can't normalize in 2 way at the same time!"
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49
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50 assert name in ['avicenna','harry','rita','sylvester','ule']
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51 common = os.path.join('UTLC','filetensor',name+'_')
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52 trname,vname,tename = [config.get_filepath_in_roots(common+subset+'.ft.gz',
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53 common+subset+'.ft')
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54 for subset in ['train','valid','test']]
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55
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56 train = load_filetensor(trname)
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57 valid = load_filetensor(vname)
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58 test = load_filetensor(tename)
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59 if randomize_valid:
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60 rng = numpy.random.RandomState([1,2,3,4])
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61 perm = rng.permutation(valid.shape[0])
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62 valid = valid[perm]
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63 if randomize_test:
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64 rng = numpy.random.RandomState([1,2,3,4])
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65 perm = rng.permutation(test.shape[0])
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66 test = test[perm]
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67
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68 if normalize or normalize_on_the_fly:
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69 if normalize_on_the_fly:
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70 # Shared variables of the original type
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71 train = theano.shared(train, borrow=True, name=name+"_train")
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72 valid = theano.shared(valid, borrow=True, name=name+"_valid")
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73 test = theano.shared(test, borrow=True, name=name+"_test")
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74 # Symbolic variables cast into floatX
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75 train = theano.tensor.cast(train, theano.config.floatX)
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76 valid = theano.tensor.cast(valid, theano.config.floatX)
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77 test = theano.tensor.cast(test, theano.config.floatX)
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78 else:
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79 train = numpy.asarray(train, theano.config.floatX)
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80 valid = numpy.asarray(valid, theano.config.floatX)
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81 test = numpy.asarray(test, theano.config.floatX)
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82
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83 if name == "ule":
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84 train /= 255
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85 valid /= 255
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86 test /= 255
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87 elif name in ["avicenna", "sylvester"]:
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88 if name == "avicenna":
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89 train_mean = 514.62154022835455
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90 train_std = 6.829096494224145
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91 else:
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92 train_mean = 403.81889927027686
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93 train_std = 96.43841050784053
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94 train -= train_mean
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95 valid -= train_mean
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96 test -= train_mean
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97 train /= train_std
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98 valid /= train_std
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99 test /= train_std
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100 elif name == "harry":
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101 std = 0.69336046033925791#train.std()slow to compute
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102 train /= std
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103 valid /= std
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104 test /= std
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105 elif name == "rita":
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106 v = numpy.asarray(230, dtype=theano.config.floatX)
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107 train /= v
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108 valid /= v
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109 test /= v
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110 else:
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111 raise Exception("This dataset don't have its normalization defined")
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112 if transfer:
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113 transfer = load_filetensor(os.path.join(config.data_root(),"UTLC","filetensor",name+"_transfer.ft"))
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114 return train, valid, test, transfer
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115 else:
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116 return train, valid, test
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117
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118 def load_sparse_dataset(name, normalize=True, transfer=False,
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119 randomize_valid=False,
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120 randomize_test=False):
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121 """ Load the train,valid,test data for the dataset `name`
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122 and return it in sparse format.
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123
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124 We suppose the data was created with ift6266h11/pretraitement/to_npy.py that
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125 shuffle the train. So the train should already be shuffled.
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126
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127 :param normalize: If True, we normalize the train dataset
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128 before returning it
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129 :param transfer: If True also return the transfer label
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130 :param randomize_valid: see same option for load_ndarray_dataset
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131 :param randomize_test: see same option for load_ndarray_dataset
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132
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133 """
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134 assert name in ['harry','terry','ule']
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135 common = os.path.join('UTLC','sparse',name+'_')
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136 trname,vname,tename = [config.get_filepath_in_roots(common+subset+'.npy.gz',
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137 common+subset+'.npy')
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138 for subset in ['train','valid','test']]
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139 train = load_sparse(trname)
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140 valid = load_sparse(vname)
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141 test = load_sparse(tename)
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142
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143 # Data should already be in csr format that support
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144 # this type of indexing.
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145 if randomize_valid:
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146 rng = numpy.random.RandomState([1,2,3,4])
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147 perm = rng.permutation(valid.shape[0])
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148 valid = valid[perm]
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149 if randomize_test:
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150 rng = numpy.random.RandomState([1,2,3,4])
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151 perm = rng.permutation(test.shape[0])
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152 test = test[perm]
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153
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154 if normalize:
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155 if name == "ule":
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156 train = train.astype(theano.config.floatX) / 255
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157 valid = valid.astype(theano.config.floatX) / 255
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158 test = test.astype(theano.config.floatX) / 255
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159 elif name == "harry":
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160 train = train.astype(theano.config.floatX)
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161 valid = valid.astype(theano.config.floatX)
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162 test = test.astype(theano.config.floatX)
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163 std = 0.69336046033925791#train.std()slow to compute
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164 train = (train) / std
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165 valid = (valid) / std
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166 test = (test) / std
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167 elif name == "terry":
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168 train = train.astype(theano.config.floatX)
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169 valid = valid.astype(theano.config.floatX)
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170 test = test.astype(theano.config.floatX)
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171 train = (train) / 300
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172 valid = (valid) / 300
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173 test = (test) / 300
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174 else:
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175 raise Exception("This dataset don't have its normalization defined")
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176 if transfer:
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177 transfer = load_sparse(os.path.join(config.data_root(),"UTLC","sparse",name+"_transfer.npy"))
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178 return train, valid, test, transfer
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179 else:
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180 return train, valid, test
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181
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182 def load_ndarray_label(name):
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183 """ Load the train,valid,test data for the dataset `name`
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184 and return it in ndarray format.
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185
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186 This is only available for the toy dataset ule.
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187 """
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188 assert name in ['ule']
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189 trname,vname,tename = [os.path.join(config.data_root(),
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190 'UTLC','filetensor',
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191 name+'_'+subset+'.ft')
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192 for subset in ['trainl','validl','testl']]
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193 trainl = load_filetensor(trname)
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194 validl = load_filetensor(vname)
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195 testl = load_filetensor(tename)
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196 return trainl, validl, testl
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197
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198 def load_filetensor(fname):
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199 f = None
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200 try:
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201 if not os.path.exists(fname):
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202 fname = fname+'.gz'
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203 assert os.path.exists(fname)
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204 f = gzip.open(fname)
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205 elif fname.endswith('.gz'):
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206 f = gzip.open(fname)
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207 else:
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208 f = open(fname)
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209 d = ft.read(f)
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210 finally:
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211 if f:
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212 f.close()
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213
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214 return d
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215
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216 def load_sparse(fname):
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217 f = None
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218 try:
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219 if not os.path.exists(fname):
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220 fname = fname+'.gz'
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221 assert os.path.exists(fname)
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222 f = gzip.open(fname)
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223 elif fname.endswith('.gz'):
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224 f = gzip.open(fname)
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225 else:
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226 f = open(fname)
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227 d = cPickle.load(f)
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228 finally:
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229 if f:
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230 f.close()
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231 return d
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232
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233 if __name__ == '__main__':
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234 import numpy
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235 import scipy.sparse
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236
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237 # Test loading of transfer data
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238 train, valid, test, transfer = load_ndarray_dataset("ule", normalize=True, transfer=True)
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239 assert train.shape[0]==transfer.shape[0]
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240
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241 for name in ['avicenna','harry','rita','sylvester','ule']:
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242 train, valid, test = load_ndarray_dataset(name, normalize=True)
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243 print name,"dtype, max, min, mean, std"
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244 print train.dtype, train.max(), train.min(), train.mean(), train.std()
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245 assert isinstance(train, numpy.ndarray)
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246 assert isinstance(valid, numpy.ndarray)
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247 assert isinstance(test, numpy.ndarray)
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248 assert train.shape[1]==test.shape[1]==valid.shape[1]
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249
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2993b2a5c1af allow to load UTLC transfer label data.
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250 # Test loading of transfer data
2993b2a5c1af allow to load UTLC transfer label data.
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parents: 1406
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251 train, valid, test, transfer = load_sparse_dataset("ule", normalize=True, transfer=True)
2993b2a5c1af allow to load UTLC transfer label data.
Frederic Bastien <nouiz@nouiz.org>
parents: 1406
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252 assert train.shape[0]==transfer.shape[0]
2993b2a5c1af allow to load UTLC transfer label data.
Frederic Bastien <nouiz@nouiz.org>
parents: 1406
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253
1406
6003f733a994 added the normalization of the last UTLC dataset
Frederic Bastien <nouiz@nouiz.org>
parents: 1404
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254 for name in ['harry','terry','ule']:
6003f733a994 added the normalization of the last UTLC dataset
Frederic Bastien <nouiz@nouiz.org>
parents: 1404
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255 train, valid, test = load_sparse_dataset(name, normalize=True)
1404
89017617ab36 normalize 5 of the UTLC datasets.
Frederic Bastien <nouiz@nouiz.org>
parents: 1402
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256 nb_elem = numpy.prod(train.shape)
89017617ab36 normalize 5 of the UTLC datasets.
Frederic Bastien <nouiz@nouiz.org>
parents: 1402
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257 mi = train.data.min()
89017617ab36 normalize 5 of the UTLC datasets.
Frederic Bastien <nouiz@nouiz.org>
parents: 1402
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258 ma = train.data.max()
89017617ab36 normalize 5 of the UTLC datasets.
Frederic Bastien <nouiz@nouiz.org>
parents: 1402
diff changeset
259 mi = min(0, mi)
89017617ab36 normalize 5 of the UTLC datasets.
Frederic Bastien <nouiz@nouiz.org>
parents: 1402
diff changeset
260 ma = max(0, ma)
89017617ab36 normalize 5 of the UTLC datasets.
Frederic Bastien <nouiz@nouiz.org>
parents: 1402
diff changeset
261 su = train.data.sum()
89017617ab36 normalize 5 of the UTLC datasets.
Frederic Bastien <nouiz@nouiz.org>
parents: 1402
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262 mean = float(su)/nb_elem
89017617ab36 normalize 5 of the UTLC datasets.
Frederic Bastien <nouiz@nouiz.org>
parents: 1402
diff changeset
263 print name,"dtype, max, min, mean, nb non-zero, nb element, %sparse"
89017617ab36 normalize 5 of the UTLC datasets.
Frederic Bastien <nouiz@nouiz.org>
parents: 1402
diff changeset
264 print train.dtype, ma, mi, mean, train.nnz, nb_elem, (nb_elem-float(train.nnz))/nb_elem
1406
6003f733a994 added the normalization of the last UTLC dataset
Frederic Bastien <nouiz@nouiz.org>
parents: 1404
diff changeset
265 print name,"max, min, mean, std (all stats on non-zero element)"
6003f733a994 added the normalization of the last UTLC dataset
Frederic Bastien <nouiz@nouiz.org>
parents: 1404
diff changeset
266 print train.data.max(), train.data.min(), train.data.mean(), train.data.std()
1402
b14f3d6f5cd4 first version of a script to load the utlc datasets.
Frederic Bastien <nouiz@nouiz.org>
parents:
diff changeset
267 assert scipy.sparse.issparse(train)
b14f3d6f5cd4 first version of a script to load the utlc datasets.
Frederic Bastien <nouiz@nouiz.org>
parents:
diff changeset
268 assert scipy.sparse.issparse(valid)
b14f3d6f5cd4 first version of a script to load the utlc datasets.
Frederic Bastien <nouiz@nouiz.org>
parents:
diff changeset
269 assert scipy.sparse.issparse(test)
b14f3d6f5cd4 first version of a script to load the utlc datasets.
Frederic Bastien <nouiz@nouiz.org>
parents:
diff changeset
270 assert train.shape[1]==test.shape[1]==valid.shape[1]