comparison baseline_algorithms/conv_mlp/convolutional_mlp.py @ 166:17ae5a1a4dd1

Moving the convolutional MLP code into baseline
author Dumitru Erhan <dumitru.erhan@gmail.com>
date Fri, 26 Feb 2010 14:03:24 -0500
parents conv_mlp/convolutional_mlp.py@33038ab4e799
children
comparison
equal deleted inserted replaced
165:4bc5eeec6394 166:17ae5a1a4dd1
1 """
2 This tutorial introduces the LeNet5 neural network architecture using Theano. LeNet5 is a
3 convolutional neural network, good for classifying images. This tutorial shows how to build the
4 architecture, and comes with all the hyper-parameters you need to reproduce the paper's MNIST
5 results.
6
7 The best results are obtained after X iterations of the main program loop, which takes ***
8 minutes on my workstation (an Intel Core i7, circa July 2009), and *** minutes on my GPU (an
9 NVIDIA GTX 285 graphics processor).
10
11 This implementation simplifies the model in the following ways:
12
13 - LeNetConvPool doesn't implement location-specific gain and bias parameters
14 - LeNetConvPool doesn't implement pooling by average, it implements pooling by max.
15 - Digit classification is implemented with a logistic regression rather than an RBF network
16 - LeNet5 was not fully-connected convolutions at second layer
17
18 References:
19 - Y. LeCun, L. Bottou, Y. Bengio and P. Haffner: Gradient-Based Learning Applied to Document
20 Recognition, Proceedings of the IEEE, 86(11):2278-2324, November 1998.
21 http://yann.lecun.com/exdb/publis/pdf/lecun-98.pdf
22 """
23
24 import numpy, theano, cPickle, gzip, time
25 import theano.tensor as T
26 import theano.sandbox.softsign
27 import pylearn.datasets.MNIST
28 from pylearn.io import filetensor as ft
29 from theano.sandbox import conv, downsample
30
31 class LeNetConvPoolLayer(object):
32
33 def __init__(self, rng, input, filter_shape, image_shape, poolsize=(2,2)):
34 """
35 Allocate a LeNetConvPoolLayer with shared variable internal parameters.
36 :type rng: numpy.random.RandomState
37 :param rng: a random number generator used to initialize weights
38 :type input: theano.tensor.dtensor4
39 :param input: symbolic image tensor, of shape image_shape
40 :type filter_shape: tuple or list of length 4
41 :param filter_shape: (number of filters, num input feature maps,
42 filter height,filter width)
43 :type image_shape: tuple or list of length 4
44 :param image_shape: (batch size, num input feature maps,
45 image height, image width)
46 :type poolsize: tuple or list of length 2
47 :param poolsize: the downsampling (pooling) factor (#rows,#cols)
48 """
49 assert image_shape[1]==filter_shape[1]
50 self.input = input
51
52 # initialize weight values: the fan-in of each hidden neuron is
53 # restricted by the size of the receptive fields.
54 fan_in = numpy.prod(filter_shape[1:])
55 W_values = numpy.asarray( rng.uniform( \
56 low = -numpy.sqrt(3./fan_in), \
57 high = numpy.sqrt(3./fan_in), \
58 size = filter_shape), dtype = theano.config.floatX)
59 self.W = theano.shared(value = W_values)
60
61 # the bias is a 1D tensor -- one bias per output feature map
62 b_values = numpy.zeros((filter_shape[0],), dtype= theano.config.floatX)
63 self.b = theano.shared(value= b_values)
64
65 # convolve input feature maps with filters
66 conv_out = conv.conv2d(input, self.W,
67 filter_shape=filter_shape, image_shape=image_shape)
68
69 # downsample each feature map individually, using maxpooling
70 pooled_out = downsample.max_pool2D(conv_out, poolsize, ignore_border=True)
71
72 # add the bias term. Since the bias is a vector (1D array), we first
73 # reshape it to a tensor of shape (1,n_filters,1,1). Each bias will thus
74 # be broadcasted across mini-batches and feature map width & height
75 self.output = T.tanh(pooled_out + self.b.dimshuffle('x', 0, 'x', 'x'))
76
77 # store parameters of this layer
78 self.params = [self.W, self.b]
79
80
81 class SigmoidalLayer(object):
82 def __init__(self, rng, input, n_in, n_out):
83 """
84 Typical hidden layer of a MLP: units are fully-connected and have
85 sigmoidal activation function. Weight matrix W is of shape (n_in,n_out)
86 and the bias vector b is of shape (n_out,).
87
88 Hidden unit activation is given by: sigmoid(dot(input,W) + b)
89
90 :type rng: numpy.random.RandomState
91 :param rng: a random number generator used to initialize weights
92 :type input: theano.tensor.dmatrix
93 :param input: a symbolic tensor of shape (n_examples, n_in)
94 :type n_in: int
95 :param n_in: dimensionality of input
96 :type n_out: int
97 :param n_out: number of hidden units
98 """
99 self.input = input
100
101 W_values = numpy.asarray( rng.uniform( \
102 low = -numpy.sqrt(6./(n_in+n_out)), \
103 high = numpy.sqrt(6./(n_in+n_out)), \
104 size = (n_in, n_out)), dtype = theano.config.floatX)
105 self.W = theano.shared(value = W_values)
106
107 b_values = numpy.zeros((n_out,), dtype= theano.config.floatX)
108 self.b = theano.shared(value= b_values)
109
110 self.output = T.tanh(T.dot(input, self.W) + self.b)
111 self.params = [self.W, self.b]
112
113
114 class LogisticRegression(object):
115 """Multi-class Logistic Regression Class
116
117 The logistic regression is fully described by a weight matrix :math:`W`
118 and bias vector :math:`b`. Classification is done by projecting data
119 points onto a set of hyperplanes, the distance to which is used to
120 determine a class membership probability.
121 """
122
123 def __init__(self, input, n_in, n_out):
124 """ Initialize the parameters of the logistic regression
125 :param input: symbolic variable that describes the input of the
126 architecture (one minibatch)
127 :type n_in: int
128 :param n_in: number of input units, the dimension of the space in
129 which the datapoints lie
130 :type n_out: int
131 :param n_out: number of output units, the dimension of the space in
132 which the labels lie
133 """
134
135 # initialize with 0 the weights W as a matrix of shape (n_in, n_out)
136 self.W = theano.shared( value=numpy.zeros((n_in,n_out),
137 dtype = theano.config.floatX) )
138 # initialize the baises b as a vector of n_out 0s
139 self.b = theano.shared( value=numpy.zeros((n_out,),
140 dtype = theano.config.floatX) )
141 # compute vector of class-membership probabilities in symbolic form
142 self.p_y_given_x = T.nnet.softmax(T.dot(input, self.W)+self.b)
143
144 # compute prediction as class whose probability is maximal in
145 # symbolic form
146 self.y_pred=T.argmax(self.p_y_given_x, axis=1)
147
148 # list of parameters for this layer
149 self.params = [self.W, self.b]
150
151 def negative_log_likelihood(self, y):
152 """Return the mean of the negative log-likelihood of the prediction
153 of this model under a given target distribution.
154 :param y: corresponds to a vector that gives for each example the
155 correct label
156 Note: we use the mean instead of the sum so that
157 the learning rate is less dependent on the batch size
158 """
159 return -T.mean(T.log(self.p_y_given_x)[T.arange(y.shape[0]),y])
160
161 def errors(self, y):
162 """Return a float representing the number of errors in the minibatch
163 over the total number of examples of the minibatch ; zero one
164 loss over the size of the minibatch
165 """
166 # check if y has same dimension of y_pred
167 if y.ndim != self.y_pred.ndim:
168 raise TypeError('y should have the same shape as self.y_pred',
169 ('y', target.type, 'y_pred', self.y_pred.type))
170
171 # check if y is of the correct datatype
172 if y.dtype.startswith('int'):
173 # the T.neq operator returns a vector of 0s and 1s, where 1
174 # represents a mistake in prediction
175 return T.mean(T.neq(self.y_pred, y))
176 else:
177 raise NotImplementedError()
178
179
180 def load_dataset(fname,batch=20):
181
182 # repertoire qui contient les donnees NIST
183 # le repertoire suivant va fonctionner si vous etes connecte sur un ordinateur
184 # du reseau DIRO
185 datapath = '/data/lisa/data/nist/by_class/'
186 # le fichier .ft contient chiffres NIST dans un format efficace. Les chiffres
187 # sont stockes dans une matrice de NxD, ou N est le nombre d'images, est D est
188 # le nombre de pixels par image (32x32 = 1024). Chaque pixel de l'image est une
189 # valeur entre 0 et 255, correspondant a un niveau de gris. Les valeurs sont
190 # stockees comme des uint8, donc des bytes.
191 f = open(datapath+'digits/digits_train_data.ft')
192 # Verifier que vous avez assez de memoire pour loader les donnees au complet
193 # dans le memoire. Sinon, utilisez ft.arraylike, une classe construite
194 # specialement pour des fichiers qu'on ne souhaite pas loader dans RAM.
195 d = ft.read(f)
196
197 # NB: N'oubliez pas de diviser les valeurs des pixels par 255. si jamais vous
198 # utilisez les donnees commes entrees dans un reseaux de neurones et que vous
199 # voulez des entres entre 0 et 1.
200 # digits_train_data.ft contient les images, digits_train_labels.ft contient les
201 # etiquettes
202 f = open(datapath+'digits/digits_train_labels.ft')
203 labels = ft.read(f)
204
205
206 # Load the dataset
207 #f = gzip.open(fname,'rb')
208 #train_set, valid_set, test_set = cPickle.load(f)
209 #f.close()
210
211 # make minibatches of size 20
212 batch_size = batch # sized of the minibatch
213
214 # Dealing with the training set
215 # get the list of training images (x) and their labels (y)
216 (train_set_x, train_set_y) = (d[:4000,:],labels[:4000])
217 # initialize the list of training minibatches with empty list
218 train_batches = []
219 for i in xrange(0, len(train_set_x), batch_size):
220 # add to the list of minibatches the minibatch starting at
221 # position i, ending at position i+batch_size
222 # a minibatch is a pair ; the first element of the pair is a list
223 # of datapoints, the second element is the list of corresponding
224 # labels
225 train_batches = train_batches + \
226 [(train_set_x[i:i+batch_size], train_set_y[i:i+batch_size])]
227
228 #print train_batches[500]
229
230 # Dealing with the validation set
231 (valid_set_x, valid_set_y) = (d[4000:5000,:],labels[4000:5000])
232 # initialize the list of validation minibatches
233 valid_batches = []
234 for i in xrange(0, len(valid_set_x), batch_size):
235 valid_batches = valid_batches + \
236 [(valid_set_x[i:i+batch_size], valid_set_y[i:i+batch_size])]
237
238 # Dealing with the testing set
239 (test_set_x, test_set_y) = (d[5000:6000,:],labels[5000:6000])
240 # initialize the list of testing minibatches
241 test_batches = []
242 for i in xrange(0, len(test_set_x), batch_size):
243 test_batches = test_batches + \
244 [(test_set_x[i:i+batch_size], test_set_y[i:i+batch_size])]
245
246 return train_batches, valid_batches, test_batches
247
248
249 def evaluate_lenet5(learning_rate=0.1, n_iter=1, batch_size=20, n_kern0=20,n_kern1=50,filter_shape=5,n_layer=3, dataset='mnist.pkl.gz'):
250 rng = numpy.random.RandomState(23455)
251
252 print 'Before load dataset'
253 train_batches, valid_batches, test_batches = load_dataset(dataset,batch_size)
254 print 'After load dataset'
255
256 ishape = (32,32) # this is the size of NIST images
257 n_kern2=80
258
259 # allocate symbolic variables for the data
260 x = T.matrix('x') # rasterized images
261 y = T.lvector() # the labels are presented as 1D vector of [long int] labels
262
263
264 ######################
265 # BUILD ACTUAL MODEL #
266 ######################
267
268 # Reshape matrix of rasterized images of shape (batch_size,28*28)
269 # to a 4D tensor, compatible with our LeNetConvPoolLayer
270 layer0_input = x.reshape((batch_size,1,32,32))
271
272 # Construct the first convolutional pooling layer:
273 # filtering reduces the image size to (32-5+1,32-5+1)=(28,28)
274 # maxpooling reduces this further to (28/2,28/2) = (14,14)
275 # 4D output tensor is thus of shape (20,20,14,14)
276 layer0 = LeNetConvPoolLayer(rng, input=layer0_input,
277 image_shape=(batch_size,1,32,32),
278 filter_shape=(n_kern0,1,filter_shape,filter_shape), poolsize=(2,2))
279
280 if(n_layer>2):
281
282 # Construct the second convolutional pooling layer
283 # filtering reduces the image size to (14-5+1,14-5+1)=(10,10)
284 # maxpooling reduces this further to (10/2,10/2) = (5,5)
285 # 4D output tensor is thus of shape (20,50,5,5)
286 fshape=(32-filter_shape+1)/2
287 layer1 = LeNetConvPoolLayer(rng, input=layer0.output,
288 image_shape=(batch_size,n_kern0,fshape,fshape),
289 filter_shape=(n_kern1,n_kern0,filter_shape,filter_shape), poolsize=(2,2))
290
291 else:
292
293 fshape=(32-filter_shape+1)/2
294 layer1_input = layer0.output.flatten(2)
295 # construct a fully-connected sigmoidal layer
296 layer1 = SigmoidalLayer(rng, input=layer1_input,n_in=n_kern0*fshape*fshape, n_out=500)
297
298 layer2 = LogisticRegression(input=layer1.output, n_in=500, n_out=10)
299 cost = layer2.negative_log_likelihood(y)
300 test_model = theano.function([x,y], layer2.errors(y))
301 params = layer2.params+ layer1.params + layer0.params
302
303
304 if(n_layer>3):
305
306 fshape=(32-filter_shape+1)/2
307 fshape2=(fshape-filter_shape+1)/2
308 fshape3=(fshape2-filter_shape+1)/2
309 layer2 = LeNetConvPoolLayer(rng, input=layer1.output,
310 image_shape=(batch_size,n_kern1,fshape2,fshape2),
311 filter_shape=(n_kern2,n_kern1,filter_shape,filter_shape), poolsize=(2,2))
312
313 layer3_input = layer2.output.flatten(2)
314
315 layer3 = SigmoidalLayer(rng, input=layer3_input,
316 n_in=n_kern2*fshape3*fshape3, n_out=500)
317
318
319 layer4 = LogisticRegression(input=layer3.output, n_in=500, n_out=10)
320
321 cost = layer4.negative_log_likelihood(y)
322
323 test_model = theano.function([x,y], layer4.errors(y))
324
325 params = layer4.params+ layer3.params+ layer2.params+ layer1.params + layer0.params
326
327
328 elif(n_layer>2):
329
330 fshape=(32-filter_shape+1)/2
331 fshape2=(fshape-filter_shape+1)/2
332
333 # the SigmoidalLayer being fully-connected, it operates on 2D matrices of
334 # shape (batch_size,num_pixels) (i.e matrix of rasterized images).
335 # This will generate a matrix of shape (20,32*4*4) = (20,512)
336 layer2_input = layer1.output.flatten(2)
337
338 # construct a fully-connected sigmoidal layer
339 layer2 = SigmoidalLayer(rng, input=layer2_input,
340 n_in=n_kern1*fshape2*fshape2, n_out=500)
341
342
343 # classify the values of the fully-connected sigmoidal layer
344 layer3 = LogisticRegression(input=layer2.output, n_in=500, n_out=10)
345
346 # the cost we minimize during training is the NLL of the model
347 cost = layer3.negative_log_likelihood(y)
348
349 # create a function to compute the mistakes that are made by the model
350 test_model = theano.function([x,y], layer3.errors(y))
351
352 # create a list of all model parameters to be fit by gradient descent
353 params = layer3.params+ layer2.params+ layer1.params + layer0.params
354
355
356
357
358
359 # create a list of gradients for all model parameters
360 grads = T.grad(cost, params)
361
362 # train_model is a function that updates the model parameters by SGD
363 # Since this model has many parameters, it would be tedious to manually
364 # create an update rule for each model parameter. We thus create the updates
365 # dictionary by automatically looping over all (params[i],grads[i]) pairs.
366 updates = {}
367 for param_i, grad_i in zip(params, grads):
368 updates[param_i] = param_i - learning_rate * grad_i
369 train_model = theano.function([x, y], cost, updates=updates)
370
371
372 ###############
373 # TRAIN MODEL #
374 ###############
375
376 n_minibatches = len(train_batches)
377
378 # early-stopping parameters
379 patience = 10000 # look as this many examples regardless
380 patience_increase = 2 # wait this much longer when a new best is
381 # found
382 improvement_threshold = 0.995 # a relative improvement of this much is
383 # considered significant
384 validation_frequency = n_minibatches # go through this many
385 # minibatche before checking the network
386 # on the validation set; in this case we
387 # check every epoch
388
389 best_params = None
390 best_validation_loss = float('inf')
391 best_iter = 0
392 test_score = 0.
393 start_time = time.clock()
394
395 # have a maximum of `n_iter` iterations through the entire dataset
396 for iter in xrange(n_iter * n_minibatches):
397
398 # get epoch and minibatch index
399 epoch = iter / n_minibatches
400 minibatch_index = iter % n_minibatches
401
402 # get the minibatches corresponding to `iter` modulo
403 # `len(train_batches)`
404 x,y = train_batches[ minibatch_index ]
405
406 if iter %100 == 0:
407 print 'training @ iter = ', iter
408 cost_ij = train_model(x,y)
409
410 if (iter+1) % validation_frequency == 0:
411
412 # compute zero-one loss on validation set
413 this_validation_loss = 0.
414 for x,y in valid_batches:
415 # sum up the errors for each minibatch
416 this_validation_loss += test_model(x,y)
417
418 # get the average by dividing with the number of minibatches
419 this_validation_loss /= len(valid_batches)
420 print('epoch %i, minibatch %i/%i, validation error %f %%' % \
421 (epoch, minibatch_index+1, n_minibatches, \
422 this_validation_loss*100.))
423
424
425 # if we got the best validation score until now
426 if this_validation_loss < best_validation_loss:
427
428 #improve patience if loss improvement is good enough
429 if this_validation_loss < best_validation_loss * \
430 improvement_threshold :
431 patience = max(patience, iter * patience_increase)
432
433 # save best validation score and iteration number
434 best_validation_loss = this_validation_loss
435 best_iter = iter
436
437 # test it on the test set
438 test_score = 0.
439 for x,y in test_batches:
440 test_score += test_model(x,y)
441 test_score /= len(test_batches)
442 print((' epoch %i, minibatch %i/%i, test error of best '
443 'model %f %%') %
444 (epoch, minibatch_index+1, n_minibatches,
445 test_score*100.))
446
447 if patience <= iter :
448 break
449
450 end_time = time.clock()
451 print('Optimization complete.')
452 print('Best validation score of %f %% obtained at iteration %i,'\
453 'with test performance %f %%' %
454 (best_validation_loss * 100., best_iter, test_score*100.))
455 print('The code ran for %f minutes' % ((end_time-start_time)/60.))
456
457 return (best_validation_loss * 100., test_score*100., (end_time-start_time)/60., best_iter)
458
459 if __name__ == '__main__':
460 evaluate_lenet5()
461
462 def experiment(state, channel):
463 print 'start experiment'
464 (best_validation_loss, test_score, minutes_trained, iter) = evaluate_lenet5(state.learning_rate, state.n_iter, state.batch_size, state.n_kern0, state.n_kern1, state.filter_shape, state.n_layer)
465 print 'end experiment'
466
467 state.best_validation_loss = best_validation_loss
468 state.test_score = test_score
469 state.minutes_trained = minutes_trained
470 state.iter = iter
471
472 return channel.COMPLETE