Mercurial > ift6266

annotate baseline/mlp/mlp_nist.py @ 349:22efb4968054

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added pnist support, will check in code for data set iterator later
author xaviermuller
date Mon, 19 Apr 2010 10:12:17 -0400
parents fca22114bb23
children 76b7182dd32e
rev   line source
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1 """
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2 This tutorial introduces the multilayer perceptron using Theano.
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3
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4 A multilayer perceptron is a logistic regressor where
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5 instead of feeding the input to the logistic regression you insert a
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6 intermidiate layer, called the hidden layer, that has a nonlinear
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7 activation function (usually tanh or sigmoid) . One can use many such
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8 hidden layers making the architecture deep. The tutorial will also tackle
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9 the problem of MNIST digit classification.
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10
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11 .. math::
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12
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13 f(x) = G( b^{(2)} + W^{(2)}( s( b^{(1)} + W^{(1)} x))),
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14
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15 References:
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16
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17 - textbooks: "Pattern Recognition and Machine Learning" -
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18 Christopher M. Bishop, section 5
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19
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20 TODO: recommended preprocessing, lr ranges, regularization ranges (explain
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21 to do lr first, then add regularization)
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22
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23 """
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24 __docformat__ = 'restructedtext en'
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25
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26 import pdb
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27 import numpy
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28 import pylab
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29 import theano
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30 import theano.tensor as T
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31 import time
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32 import theano.tensor.nnet
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33 import pylearn
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34 import theano,pylearn.version,ift6266
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35 from pylearn.io import filetensor as ft
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36 from ift6266 import datasets
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37
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38 data_path = '/data/lisa/data/nist/by_class/'
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39
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40 class MLP(object):
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41 """Multi-Layer Perceptron Class
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42
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43 A multilayer perceptron is a feedforward artificial neural network model
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44 that has one layer or more of hidden units and nonlinear activations.
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45 Intermidiate layers usually have as activation function thanh or the
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46 sigmoid function while the top layer is a softamx layer.
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47 """
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48
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49
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50
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51 def __init__(self, input, n_in, n_hidden, n_out,learning_rate):
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52 """Initialize the parameters for the multilayer perceptron
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53
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54 :param input: symbolic variable that describes the input of the
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55 architecture (one minibatch)
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56
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57 :param n_in: number of input units, the dimension of the space in
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58 which the datapoints lie
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59
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60 :param n_hidden: number of hidden units
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61
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62 :param n_out: number of output units, the dimension of the space in
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63 which the labels lie
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64
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65 """
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66
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67 # initialize the parameters theta = (W1,b1,W2,b2) ; note that this
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68 # example contains only one hidden layer, but one can have as many
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69 # layers as he/she wishes, making the network deeper. The only
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70 # problem making the network deep this way is during learning,
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71 # backpropagation being unable to move the network from the starting
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72 # point towards; this is where pre-training helps, giving a good
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73 # starting point for backpropagation, but more about this in the
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74 # other tutorials
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75
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76 # `W1` is initialized with `W1_values` which is uniformely sampled
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77 # from -6./sqrt(n_in+n_hidden) and 6./sqrt(n_in+n_hidden)
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78 # the output of uniform if converted using asarray to dtype
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79 # theano.config.floatX so that the code is runable on GPU
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80 W1_values = numpy.asarray( numpy.random.uniform( \
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81 low = -numpy.sqrt(6./(n_in+n_hidden)), \
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82 high = numpy.sqrt(6./(n_in+n_hidden)), \
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83 size = (n_in, n_hidden)), dtype = theano.config.floatX)
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84 # `W2` is initialized with `W2_values` which is uniformely sampled
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85 # from -6./sqrt(n_hidden+n_out) and 6./sqrt(n_hidden+n_out)
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86 # the output of uniform if converted using asarray to dtype
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87 # theano.config.floatX so that the code is runable on GPU
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88 W2_values = numpy.asarray( numpy.random.uniform(
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89 low = -numpy.sqrt(6./(n_hidden+n_out)), \
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90 high= numpy.sqrt(6./(n_hidden+n_out)),\
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91 size= (n_hidden, n_out)), dtype = theano.config.floatX)
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92
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93 self.W1 = theano.shared( value = W1_values )
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94 self.b1 = theano.shared( value = numpy.zeros((n_hidden,),
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95 dtype= theano.config.floatX))
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96 self.W2 = theano.shared( value = W2_values )
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97 self.b2 = theano.shared( value = numpy.zeros((n_out,),
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98 dtype= theano.config.floatX))
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99
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100 #include the learning rate in the classifer so
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101 #we can modify it on the fly when we want
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102 lr_value=learning_rate
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103 self.lr=theano.shared(value=lr_value)
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104 # symbolic expression computing the values of the hidden layer
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105 self.hidden = T.tanh(T.dot(input, self.W1)+ self.b1)
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106
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107
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108
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109 # symbolic expression computing the values of the top layer
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110 self.p_y_given_x= T.nnet.softmax(T.dot(self.hidden, self.W2)+self.b2)
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111
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112 # compute prediction as class whose probability is maximal in
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113 # symbolic form
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114 self.y_pred = T.argmax( self.p_y_given_x, axis =1)
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115 self.y_pred_num = T.argmax( self.p_y_given_x[0:9], axis =1)
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116
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117
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118
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119
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120 # L1 norm ; one regularization option is to enforce L1 norm to
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121 # be small
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122 self.L1 = abs(self.W1).sum() + abs(self.W2).sum()
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123
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124 # square of L2 norm ; one regularization option is to enforce
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125 # square of L2 norm to be small
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126 self.L2_sqr = (self.W1**2).sum() + (self.W2**2).sum()
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127
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128
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129
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130 def negative_log_likelihood(self, y):
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131 """Return the mean of the negative log-likelihood of the prediction
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132 of this model under a given target distribution.
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133
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134 .. math::
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135
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136 \frac{1}{|\mathcal{D}|}\mathcal{L} (\theta=\{W,b\}, \mathcal{D}) =
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137 \frac{1}{|\mathcal{D}|}\sum_{i=0}^{|\mathcal{D}|} \log(P(Y=y^{(i)}|x^{(i)}, W,b)) \\
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138 \ell (\theta=\{W,b\}, \mathcal{D})
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139
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140
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141 :param y: corresponds to a vector that gives for each example the
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142 :correct label
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143 """
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144 return -T.mean(T.log(self.p_y_given_x)[T.arange(y.shape[0]),y])
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148
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149 def errors(self, y):
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150 """Return a float representing the number of errors in the minibatch
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151 over the total number of examples of the minibatch
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152 """
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153
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154 # check if y has same dimension of y_pred
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155 if y.ndim != self.y_pred.ndim:
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156 raise TypeError('y should have the same shape as self.y_pred',
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157 ('y', target.type, 'y_pred', self.y_pred.type))
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158 # check if y is of the correct datatype
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159 if y.dtype.startswith('int'):
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160 # the T.neq operator returns a vector of 0s and 1s, where 1
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161 # represents a mistake in prediction
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162 return T.mean(T.neq(self.y_pred, y))
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163 else:
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164 raise NotImplementedError()
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165
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166 def mlp_get_nist_error(model_name='/u/mullerx/ift6266h10_sandbox_db/xvm_final_lr1_p073/8/best_model.npy.npz',
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167 data_set=0):
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168
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169
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170
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171 # allocate symbolic variables for the data
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172 x = T.fmatrix() # the data is presented as rasterized images
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173 y = T.lvector() # the labels are presented as 1D vector of
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174 # [long int] labels
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175
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176 # load the data set and create an mlp based on the dimensions of the model
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177 model=numpy.load(model_name)
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178 W1=model['W1']
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179 W2=model['W2']
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180 b1=model['b1']
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181 b2=model['b2']
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182 nb_hidden=b1.shape[0]
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183 input_dim=W1.shape[0]
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184 nb_targets=b2.shape[0]
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185 learning_rate=0.1
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186
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187
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188 if data_set==0:
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189 dataset=datasets.nist_all()
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190 elif data_set==1:
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191 dataset=datasets.nist_P07()
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192
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193
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194 classifier = MLP( input=x,\
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195 n_in=input_dim,\
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196 n_hidden=nb_hidden,\
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197 n_out=nb_targets,
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198 learning_rate=learning_rate)
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199
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200
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201 #overwrite weights with weigths from model
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202 classifier.W1.value=W1
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203 classifier.W2.value=W2
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204 classifier.b1.value=b1
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205 classifier.b2.value=b2
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206
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207
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208 cost = classifier.negative_log_likelihood(y) \
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209 + 0.0 * classifier.L1 \
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210 + 0.0 * classifier.L2_sqr
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211
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212 # compiling a theano function that computes the mistakes that are made by
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213 # the model on a minibatch
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214 test_model = theano.function([x,y], classifier.errors(y))
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215
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216
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217
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218 #get the test error
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219 #use a batch size of 1 so we can get the sub-class error
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220 #without messing with matrices (will be upgraded later)
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221 test_score=0
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222 temp=0
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223 for xt,yt in dataset.test(20):
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224 test_score += test_model(xt,yt)
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225 temp = temp+1
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226 test_score /= temp
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227
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228
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229 return test_score*100
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230
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231
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232
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233
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234
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235
304
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236 def mlp_full_nist( verbose = 1,\
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237 adaptive_lr = 0,\
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238 data_set=0,\
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239 learning_rate=0.01,\
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240 L1_reg = 0.00,\
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241 L2_reg = 0.0001,\
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242 nb_max_exemples=1000000,\
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243 batch_size=20,\
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244 nb_hidden = 30,\
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245 nb_targets = 62,
338
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246 tau=1e6,\
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247 lr_t2_factor=0.5,\
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248 init_model=0,\
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249 channel=0):
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250
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251
338
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252 if channel!=0:
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253 channel.save()
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254 configuration = [learning_rate,nb_max_exemples,nb_hidden,adaptive_lr]
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255
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256 #save initial learning rate if classical adaptive lr is used
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257 initial_lr=learning_rate
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258 max_div_count=1000
323
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259
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260
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261 total_validation_error_list = []
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262 total_train_error_list = []
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263 learning_rate_list=[]
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264 best_training_error=float('inf');
323
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265 divergence_flag_list=[]
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266
322
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267 if data_set==0:
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268 dataset=datasets.nist_all()
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269 elif data_set==1:
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270 dataset=datasets.nist_P07()
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271 elif data_set==2:
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272 dataset=datasets.PNIST07()
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273
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274
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275
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276
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277 ishape = (32,32) # this is the size of NIST images
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278
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279 # allocate symbolic variables for the data
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280 x = T.fmatrix() # the data is presented as rasterized images
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281 y = T.lvector() # the labels are presented as 1D vector of
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282 # [long int] labels
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283
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284
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285 # construct the logistic regression class
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286 classifier = MLP( input=x,\
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287 n_in=32*32,\
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288 n_hidden=nb_hidden,\
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289 n_out=nb_targets,
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290 learning_rate=learning_rate)
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291
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292
338
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293 # check if we want to initialise the weights with a previously calculated model
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294 # dimensions must be consistent between old model and current configuration!!!!!! (nb_hidden and nb_targets)
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295 if init_model!=0:
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296 old_model=numpy.load(init_model)
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297 classifier.W1.value=old_model['W1']
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298 classifier.W2.value=old_model['W2']
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299 classifier.b1.value=old_model['b1']
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300 classifier.b2.value=old_model['b2']
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301
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302
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303 # the cost we minimize during training is the negative log likelihood of
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304 # the model plus the regularization terms (L1 and L2); cost is expressed
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305 # here symbolically
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306 cost = classifier.negative_log_likelihood(y) \
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307 + L1_reg * classifier.L1 \
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308 + L2_reg * classifier.L2_sqr
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309
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310 # compiling a theano function that computes the mistakes that are made by
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311 # the model on a minibatch
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312 test_model = theano.function([x,y], classifier.errors(y))
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313
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314 # compute the gradient of cost with respect to theta = (W1, b1, W2, b2)
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315 g_W1 = T.grad(cost, classifier.W1)
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316 g_b1 = T.grad(cost, classifier.b1)
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317 g_W2 = T.grad(cost, classifier.W2)
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318 g_b2 = T.grad(cost, classifier.b2)
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319
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320 # specify how to update the parameters of the model as a dictionary
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321 updates = \
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322 { classifier.W1: classifier.W1 - classifier.lr*g_W1 \
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323 , classifier.b1: classifier.b1 - classifier.lr*g_b1 \
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324 , classifier.W2: classifier.W2 - classifier.lr*g_W2 \
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325 , classifier.b2: classifier.b2 - classifier.lr*g_b2 }
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326
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327 # compiling a theano function `train_model` that returns the cost, but in
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328 # the same time updates the parameter of the model based on the rules
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329 # defined in `updates`
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330 train_model = theano.function([x, y], cost, updates = updates )
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331
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332
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333
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337
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338
110
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339
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340 #conditions for stopping the adaptation:
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341 #1) we have reached nb_max_exemples (this is rounded up to be a multiple of the train size so we always do at least 1 epoch)
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342 #2) validation error is going up twice in a row(probable overfitting)
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343
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344 # This means we no longer stop on slow convergence as low learning rates stopped
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345 # too fast but instead we will wait for the valid error going up 3 times in a row
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346 # We save the curb of the validation error so we can always go back to check on it
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347 # and we save the absolute best model anyway, so we might as well explore
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348 # a bit when diverging
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349
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350 #approximate number of samples in the nist training set
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351 #this is just to have a validation frequency
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352 #roughly proportionnal to the original nist training set
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353 n_minibatches = 650000/batch_size
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354
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355
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356 patience =2*nb_max_exemples/batch_size #in units of minibatch
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357 validation_frequency = n_minibatches/4
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358
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359
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360
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361
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362
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363 best_validation_loss = float('inf')
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364 best_iter = 0
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365 test_score = 0.
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366 start_time = time.clock()
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367 time_n=0 #in unit of exemples
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368 minibatch_index=0
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369 epoch=0
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370 temp=0
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371 divergence_flag=0
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372
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373
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374
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375 if verbose == 1:
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376 print 'starting training'
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377 while(minibatch_index*batch_size<nb_max_exemples):
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378
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379 for x, y in dataset.train(batch_size):
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380
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381 #if we are using the classic learning rate deacay, adjust it before training of current mini-batch
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382 if adaptive_lr==2:
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383 classifier.lr.value = tau*initial_lr/(tau+time_n)
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384
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385
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386 #train model
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387 cost_ij = train_model(x,y)
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388
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389 if (minibatch_index) % validation_frequency == 0:
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390 #save the current learning rate
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391 learning_rate_list.append(classifier.lr.value)
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392 divergence_flag_list.append(divergence_flag)
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393
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394 #save temp results to check during training
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395 numpy.savez('temp_results.npy',config=configuration,total_validation_error_list=total_validation_error_list,\
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396 learning_rate_list=learning_rate_list, divergence_flag_list=divergence_flag_list)
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397
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398 # compute the validation error
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399 this_validation_loss = 0.
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400 temp=0
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401 for xv,yv in dataset.valid(1):
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402 # sum up the errors for each minibatch
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403 this_validation_loss += test_model(xv,yv)
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404 temp=temp+1
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405 # get the average by dividing with the number of minibatches
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406 this_validation_loss /= temp
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407 #save the validation loss
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408 total_validation_error_list.append(this_validation_loss)
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409 if verbose == 1:
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410 print(('epoch %i, minibatch %i, learning rate %f current validation error %f ') %
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411 (epoch, minibatch_index+1,classifier.lr.value,
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412 this_validation_loss*100.))
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413
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414 # if we got the best validation score until now
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415 if this_validation_loss < best_validation_loss:
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416 # save best validation score and iteration number
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417 best_validation_loss = this_validation_loss
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418 best_iter = minibatch_index
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419 #reset divergence flag
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420 divergence_flag=0
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421
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422 #save the best model. Overwrite the current saved best model so
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423 #we only keep the best
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424 numpy.savez('best_model.npy', config=configuration, W1=classifier.W1.value, W2=classifier.W2.value, b1=classifier.b1.value,\
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425 b2=classifier.b2.value, minibatch_index=minibatch_index)
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426
322
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427 # test it on the test set
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428 test_score = 0.
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429 temp =0
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430 for xt,yt in dataset.test(batch_size):
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431 test_score += test_model(xt,yt)
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432 temp = temp+1
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433 test_score /= temp
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434 if verbose == 1:
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435 print(('epoch %i, minibatch %i, test error of best '
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436 'model %f %%') %
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437 (epoch, minibatch_index+1,
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438 test_score*100.))
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439
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440 # if the validation error is going up, we are overfitting (or oscillating)
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441 # check if we are allowed to continue and if we will adjust the learning rate
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442 elif this_validation_loss >= best_validation_loss:
323
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443
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444
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445 # In non-classic learning rate decay, we modify the weight only when
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446 # validation error is going up
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447 if adaptive_lr==1:
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448 classifier.lr.value=classifier.lr.value*lr_t2_factor
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449
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450
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451 #cap the patience so we are allowed to diverge max_div_count times
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452 #if we are going up max_div_count in a row, we will stop immediatelty by modifying the patience
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453 divergence_flag = divergence_flag +1
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454
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455
322
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456 #calculate the test error at this point and exit
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457 # test it on the test set
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458 test_score = 0.
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459 temp=0
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460 for xt,yt in dataset.test(batch_size):
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461 test_score += test_model(xt,yt)
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462 temp=temp+1
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463 test_score /= temp
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464 if verbose == 1:
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465 print ' validation error is going up, possibly stopping soon'
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466 print((' epoch %i, minibatch %i, test error of best '
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467 'model %f %%') %
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468 (epoch, minibatch_index+1,
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469 test_score*100.))
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470
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471
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472
323
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473 # check early stop condition
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474 if divergence_flag==max_div_count:
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475 minibatch_index=nb_max_exemples
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476 print 'we have diverged, early stopping kicks in'
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477 break
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478
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479 #check if we have seen enough exemples
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480 #force one epoch at least
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481 if epoch>0 and minibatch_index*batch_size>nb_max_exemples:
322
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482 break
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483
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484
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
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485
322
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486
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487
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488 time_n= time_n + batch_size
323
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489 minibatch_index = minibatch_index + 1
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490
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491 # we have finished looping through the training set
322
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492 epoch = epoch+1
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493 end_time = time.clock()
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494 if verbose == 1:
110
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495 print(('Optimization complete. Best validation score of %f %% '
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496 'obtained at iteration %i, with test performance %f %%') %
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497 (best_validation_loss * 100., best_iter, test_score*100.))
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498 print ('The code ran for %f minutes' % ((end_time-start_time)/60.))
322
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499 print minibatch_index
143
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500
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
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diff changeset
501 #save the model and the weights
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502 numpy.savez('model.npy', config=configuration, W1=classifier.W1.value,W2=classifier.W2.value, b1=classifier.b1.value,b2=classifier.b2.value)
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503 numpy.savez('results.npy',config=configuration,total_train_error_list=total_train_error_list,total_validation_error_list=total_validation_error_list,\
323
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504 learning_rate_list=learning_rate_list, divergence_flag_list=divergence_flag_list)
143
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diff changeset
505
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
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diff changeset
506 return (best_training_error*100.0,best_validation_loss * 100.,test_score*100.,best_iter*batch_size,(end_time-start_time)/60)
110
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507
93b4b84d86cf added simple mlp file
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diff changeset
508
93b4b84d86cf added simple mlp file
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509 if __name__ == '__main__':
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510 mlp_full_mnist()
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511
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diff changeset
512 def jobman_mlp_full_nist(state,channel):
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diff changeset
513 (train_error,validation_error,test_error,nb_exemples,time)=mlp_full_nist(learning_rate=state.learning_rate,\
304
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514 nb_max_exemples=state.nb_max_exemples,\
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parents: 237
diff changeset
515 nb_hidden=state.nb_hidden,\
1e4bf5a5b46d added type 2 adaptive learning configurable learning weight + versionning
xaviermuller
parents: 237
diff changeset
516 adaptive_lr=state.adaptive_lr,\
1e4bf5a5b46d added type 2 adaptive learning configurable learning weight + versionning
xaviermuller
parents: 237
diff changeset
517 tau=state.tau,\
1e4bf5a5b46d added type 2 adaptive learning configurable learning weight + versionning
xaviermuller
parents: 237
diff changeset
518 verbose = state.verbose,\
324
1763c64030d1 fixed bug in jobman interface
xaviermuller
parents: 323
diff changeset
519 lr_t2_factor=state.lr_t2_factor,
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
520 data_set=state.data_set,
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
521 channel=channel)
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
522 state.train_error=train_error
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
523 state.validation_error=validation_error
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
524 state.test_error=test_error
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
525 state.nb_exemples=nb_exemples
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
526 state.time=time
304
1e4bf5a5b46d added type 2 adaptive learning configurable learning weight + versionning
xaviermuller
parents: 237
diff changeset
527 pylearn.version.record_versions(state,[theano,ift6266,pylearn])
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
528 return channel.COMPLETE
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
529
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
530