annotate baseline/mlp/mlp_nist.py @ 404:1509b9bba4cc

added digit/char error
author xaviermuller
date Wed, 28 Apr 2010 11:45:14 -0400
parents 60a4432b8071
children 195f95c3d461
rev   line source
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
1 """
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
2 This tutorial introduces the multilayer perceptron using Theano.
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
3
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
4 A multilayer perceptron is a logistic regressor where
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
5 instead of feeding the input to the logistic regression you insert a
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
6 intermidiate layer, called the hidden layer, that has a nonlinear
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
7 activation function (usually tanh or sigmoid) . One can use many such
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
8 hidden layers making the architecture deep. The tutorial will also tackle
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
9 the problem of MNIST digit classification.
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
10
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
11 .. math::
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
12
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
13 f(x) = G( b^{(2)} + W^{(2)}( s( b^{(1)} + W^{(1)} x))),
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
14
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
15 References:
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
16
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
17 - textbooks: "Pattern Recognition and Machine Learning" -
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
18 Christopher M. Bishop, section 5
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
19
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
20 TODO: recommended preprocessing, lr ranges, regularization ranges (explain
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
21 to do lr first, then add regularization)
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
22
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
23 """
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
24 __docformat__ = 'restructedtext en'
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
25
355
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
26 import sys
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
27 import pdb
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
28 import numpy
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
29 import pylab
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
30 import theano
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
31 import theano.tensor as T
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
32 import time
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
33 import theano.tensor.nnet
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
34 import pylearn
304
1e4bf5a5b46d added type 2 adaptive learning configurable learning weight + versionning
xaviermuller
parents: 237
diff changeset
35 import theano,pylearn.version,ift6266
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
36 from pylearn.io import filetensor as ft
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
37 from ift6266 import datasets
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
38
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
39 data_path = '/data/lisa/data/nist/by_class/'
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
40
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
41 class MLP(object):
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
42 """Multi-Layer Perceptron Class
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
43
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
44 A multilayer perceptron is a feedforward artificial neural network model
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
45 that has one layer or more of hidden units and nonlinear activations.
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
46 Intermidiate layers usually have as activation function thanh or the
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
47 sigmoid function while the top layer is a softamx layer.
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
48 """
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
49
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
50
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
51
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
52 def __init__(self, input, n_in, n_hidden, n_out,learning_rate):
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
53 """Initialize the parameters for the multilayer perceptron
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
54
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
55 :param input: symbolic variable that describes the input of the
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
56 architecture (one minibatch)
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
57
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
58 :param n_in: number of input units, the dimension of the space in
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
59 which the datapoints lie
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
60
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
61 :param n_hidden: number of hidden units
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
62
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
63 :param n_out: number of output units, the dimension of the space in
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
64 which the labels lie
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
65
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
66 """
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
67
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
68 # initialize the parameters theta = (W1,b1,W2,b2) ; note that this
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
69 # example contains only one hidden layer, but one can have as many
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
70 # layers as he/she wishes, making the network deeper. The only
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
71 # problem making the network deep this way is during learning,
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
72 # backpropagation being unable to move the network from the starting
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
73 # point towards; this is where pre-training helps, giving a good
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
74 # starting point for backpropagation, but more about this in the
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
75 # other tutorials
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
76
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
77 # `W1` is initialized with `W1_values` which is uniformely sampled
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
78 # from -6./sqrt(n_in+n_hidden) and 6./sqrt(n_in+n_hidden)
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
79 # the output of uniform if converted using asarray to dtype
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
80 # theano.config.floatX so that the code is runable on GPU
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
81 W1_values = numpy.asarray( numpy.random.uniform( \
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
82 low = -numpy.sqrt(6./(n_in+n_hidden)), \
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
83 high = numpy.sqrt(6./(n_in+n_hidden)), \
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
84 size = (n_in, n_hidden)), dtype = theano.config.floatX)
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
85 # `W2` is initialized with `W2_values` which is uniformely sampled
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
86 # from -6./sqrt(n_hidden+n_out) and 6./sqrt(n_hidden+n_out)
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
87 # the output of uniform if converted using asarray to dtype
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
88 # theano.config.floatX so that the code is runable on GPU
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
89 W2_values = numpy.asarray( numpy.random.uniform(
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
90 low = -numpy.sqrt(6./(n_hidden+n_out)), \
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
91 high= numpy.sqrt(6./(n_hidden+n_out)),\
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
92 size= (n_hidden, n_out)), dtype = theano.config.floatX)
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
93
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
94 self.W1 = theano.shared( value = W1_values )
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
95 self.b1 = theano.shared( value = numpy.zeros((n_hidden,),
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
96 dtype= theano.config.floatX))
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
97 self.W2 = theano.shared( value = W2_values )
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
98 self.b2 = theano.shared( value = numpy.zeros((n_out,),
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
99 dtype= theano.config.floatX))
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
100
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
101 #include the learning rate in the classifer so
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
102 #we can modify it on the fly when we want
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
103 lr_value=learning_rate
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
104 self.lr=theano.shared(value=lr_value)
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
105 # symbolic expression computing the values of the hidden layer
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
106 self.hidden = T.tanh(T.dot(input, self.W1)+ self.b1)
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
107
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
108
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
109
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
110 # symbolic expression computing the values of the top layer
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
111 self.p_y_given_x= T.nnet.softmax(T.dot(self.hidden, self.W2)+self.b2)
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
112
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
113 # compute prediction as class whose probability is maximal in
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
114 # symbolic form
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
115 self.y_pred = T.argmax( self.p_y_given_x, axis =1)
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
116 self.y_pred_num = T.argmax( self.p_y_given_x[0:9], axis =1)
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
117
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
118
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
119
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
120
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
121 # L1 norm ; one regularization option is to enforce L1 norm to
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
122 # be small
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
123 self.L1 = abs(self.W1).sum() + abs(self.W2).sum()
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
124
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
125 # square of L2 norm ; one regularization option is to enforce
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
126 # square of L2 norm to be small
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
127 self.L2_sqr = (self.W1**2).sum() + (self.W2**2).sum()
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
128
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
129
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
130
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
131 def negative_log_likelihood(self, y):
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
132 """Return the mean of the negative log-likelihood of the prediction
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
133 of this model under a given target distribution.
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
134
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
135 .. math::
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
136
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
137 \frac{1}{|\mathcal{D}|}\mathcal{L} (\theta=\{W,b\}, \mathcal{D}) =
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
138 \frac{1}{|\mathcal{D}|}\sum_{i=0}^{|\mathcal{D}|} \log(P(Y=y^{(i)}|x^{(i)}, W,b)) \\
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
139 \ell (\theta=\{W,b\}, \mathcal{D})
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
140
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
141
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
142 :param y: corresponds to a vector that gives for each example the
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
143 :correct label
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
144 """
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
145 return -T.mean(T.log(self.p_y_given_x)[T.arange(y.shape[0]),y])
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
146
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
147
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
148
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
149
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
150 def errors(self, y):
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
151 """Return a float representing the number of errors in the minibatch
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
152 over the total number of examples of the minibatch
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
153 """
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
154
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
155 # check if y has same dimension of y_pred
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
156 if y.ndim != self.y_pred.ndim:
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
157 raise TypeError('y should have the same shape as self.y_pred',
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
158 ('y', target.type, 'y_pred', self.y_pred.type))
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
159 # check if y is of the correct datatype
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
160 if y.dtype.startswith('int'):
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
161 # the T.neq operator returns a vector of 0s and 1s, where 1
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
162 # represents a mistake in prediction
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
163 return T.mean(T.neq(self.y_pred, y))
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
164 else:
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
165 raise NotImplementedError()
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
166
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
167 def mlp_get_nist_error(model_name='/u/mullerx/ift6266h10_sandbox_db/xvm_final_lr1_p073/8/best_model.npy.npz',
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
168 data_set=0):
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
169
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
170
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
171
404
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
172
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
173
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
174
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
175
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
176 # load the data set and create an mlp based on the dimensions of the model
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
177 model=numpy.load(model_name)
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
178 W1=model['W1']
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
179 W2=model['W2']
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
180 b1=model['b1']
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
181 b2=model['b2']
404
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
182
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
183 total_error_count=0.0
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
184 total_exemple_count=0.0
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
185
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
186 nb_error_count=0.0
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
187 nb_exemple_count=0.0
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
188
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
189 char_error_count=0.0
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
190 char_exemple_count=0.0
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
191
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
192 min_error_count=0.0
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
193 min_exemple_count=0.0
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
194
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
195 maj_error_count=0.0
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
196 maj_exemple_count=0.0
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
197
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
198
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
199
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
200 if data_set==0:
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
201 dataset=datasets.nist_all()
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
202 elif data_set==1:
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
203 dataset=datasets.nist_P07()
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
204
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
205
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
206
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
207 #get the test error
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
208 #use a batch size of 1 so we can get the sub-class error
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
209 #without messing with matrices (will be upgraded later)
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
210 test_score=0
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
211 temp=0
404
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
212 for xt,yt in dataset.test(1):
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
213
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
214 total_exemple_count = total_exemple_count +1
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
215 #get activation for layer 1
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
216 a0=numpy.dot(numpy.transpose(W1),numpy.transpose(xt[0])) + b1
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
217 #add non linear function to layer 1 activation
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
218 a0_out=numpy.tanh(a0)
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
219
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
220 #get activation for output layer
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
221 a1= numpy.dot(numpy.transpose(W2),a0_out) + b2
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
222 #add non linear function for output activation (softmax)
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
223 a1_exp = numpy.exp(a1)
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
224 sum_a1=numpy.sum(a1_exp)
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
225 a1_out=a1_exp/sum_a1
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
226
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
227 predicted_class=numpy.argmax(a1_out)
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
228 wanted_class=yt[0]
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
229 if(predicted_class!=wanted_class):
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
230 total_error_count = total_error_count +1
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
231
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
232 #treat digit error
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
233 if(wanted_class<10):
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
234 nb_exemple_count=nb_exemple_count + 1
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
235 predicted_class=numpy.argmax(a1_out[0:10])
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
236 if(predicted_class!=wanted_class):
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
237 nb_error_count = nb_error_count +1
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
238
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
239 if(wanted_class>9):
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
240 char_exemple_count=char_exemple_count + 1
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
241 predicted_class=numpy.argmax(a1_out[10:62])+10
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
242 if((predicted_class!=wanted_class) and ((predicted_class+26)!=wanted_class) and ((predicted_class-26)!=wanted_class)):
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
243 char_error_count = char_error_count +1
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
244
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
245
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
246
404
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
247 print (('total error = %f') % ((total_error_count/total_exemple_count)*100.0))
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
248 print (('number error = %f') % ((nb_error_count/nb_exemple_count)*100.0))
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
249 print (('char error = %f') % ((char_error_count/char_exemple_count)*100.0))
1509b9bba4cc added digit/char error
xaviermuller
parents: 378
diff changeset
250 return (total_error_count/total_exemple_count)*100.0
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
251
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
252
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
253
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
254
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
255
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
256
304
1e4bf5a5b46d added type 2 adaptive learning configurable learning weight + versionning
xaviermuller
parents: 237
diff changeset
257 def mlp_full_nist( verbose = 1,\
145
8ceaaf812891 changed adaptive lr flag from bool to int for jobman issues
XavierMuller
parents: 143
diff changeset
258 adaptive_lr = 0,\
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
259 data_set=0,\
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
260 learning_rate=0.01,\
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
261 L1_reg = 0.00,\
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
262 L2_reg = 0.0001,\
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
263 nb_max_exemples=1000000,\
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
264 batch_size=20,\
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
265 nb_hidden = 30,\
212
e390b0454515 added classic lr time decay and py code to calculate the error based on a saved model
xaviermuller
parents: 169
diff changeset
266 nb_targets = 62,
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
267 tau=1e6,\
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
268 lr_t2_factor=0.5,\
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
269 init_model=0,\
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
270 channel=0):
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
271
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
272
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
273 if channel!=0:
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
274 channel.save()
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
275 configuration = [learning_rate,nb_max_exemples,nb_hidden,adaptive_lr]
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
276
212
e390b0454515 added classic lr time decay and py code to calculate the error based on a saved model
xaviermuller
parents: 169
diff changeset
277 #save initial learning rate if classical adaptive lr is used
e390b0454515 added classic lr time decay and py code to calculate the error based on a saved model
xaviermuller
parents: 169
diff changeset
278 initial_lr=learning_rate
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
279 max_div_count=1000
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
280
212
e390b0454515 added classic lr time decay and py code to calculate the error based on a saved model
xaviermuller
parents: 169
diff changeset
281
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
282 total_validation_error_list = []
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
283 total_train_error_list = []
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
284 learning_rate_list=[]
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
285 best_training_error=float('inf');
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
286 divergence_flag_list=[]
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
287
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
288 if data_set==0:
378
60a4432b8071 added initial model for weights in jobman
xaviermuller
parents: 355
diff changeset
289 print 'using nist'
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
290 dataset=datasets.nist_all()
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
291 elif data_set==1:
378
60a4432b8071 added initial model for weights in jobman
xaviermuller
parents: 355
diff changeset
292 print 'using p07'
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
293 dataset=datasets.nist_P07()
349
22efb4968054 added pnist support, will check in code for data set iterator later
xaviermuller
parents: 338
diff changeset
294 elif data_set==2:
378
60a4432b8071 added initial model for weights in jobman
xaviermuller
parents: 355
diff changeset
295 print 'using pnist'
349
22efb4968054 added pnist support, will check in code for data set iterator later
xaviermuller
parents: 338
diff changeset
296 dataset=datasets.PNIST07()
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
297
212
e390b0454515 added classic lr time decay and py code to calculate the error based on a saved model
xaviermuller
parents: 169
diff changeset
298
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
299
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
300
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
301 ishape = (32,32) # this is the size of NIST images
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
302
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
303 # allocate symbolic variables for the data
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
304 x = T.fmatrix() # the data is presented as rasterized images
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
305 y = T.lvector() # the labels are presented as 1D vector of
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
306 # [long int] labels
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
307
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
308
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
309 # construct the logistic regression class
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
310 classifier = MLP( input=x,\
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
311 n_in=32*32,\
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
312 n_hidden=nb_hidden,\
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
313 n_out=nb_targets,
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
314 learning_rate=learning_rate)
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
315
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
316
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
317 # check if we want to initialise the weights with a previously calculated model
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
318 # dimensions must be consistent between old model and current configuration!!!!!! (nb_hidden and nb_targets)
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
319 if init_model!=0:
378
60a4432b8071 added initial model for weights in jobman
xaviermuller
parents: 355
diff changeset
320 print 'using old model'
60a4432b8071 added initial model for weights in jobman
xaviermuller
parents: 355
diff changeset
321 print init_model
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
322 old_model=numpy.load(init_model)
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
323 classifier.W1.value=old_model['W1']
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
324 classifier.W2.value=old_model['W2']
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
325 classifier.b1.value=old_model['b1']
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
326 classifier.b2.value=old_model['b2']
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
327
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
328
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
329 # the cost we minimize during training is the negative log likelihood of
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
330 # the model plus the regularization terms (L1 and L2); cost is expressed
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
331 # here symbolically
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
332 cost = classifier.negative_log_likelihood(y) \
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
333 + L1_reg * classifier.L1 \
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
334 + L2_reg * classifier.L2_sqr
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
335
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
336 # compiling a theano function that computes the mistakes that are made by
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
337 # the model on a minibatch
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
338 test_model = theano.function([x,y], classifier.errors(y))
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
339
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
340 # compute the gradient of cost with respect to theta = (W1, b1, W2, b2)
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
341 g_W1 = T.grad(cost, classifier.W1)
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
342 g_b1 = T.grad(cost, classifier.b1)
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
343 g_W2 = T.grad(cost, classifier.W2)
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
344 g_b2 = T.grad(cost, classifier.b2)
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
345
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
346 # specify how to update the parameters of the model as a dictionary
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
347 updates = \
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
348 { classifier.W1: classifier.W1 - classifier.lr*g_W1 \
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
349 , classifier.b1: classifier.b1 - classifier.lr*g_b1 \
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
350 , classifier.W2: classifier.W2 - classifier.lr*g_W2 \
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
351 , classifier.b2: classifier.b2 - classifier.lr*g_b2 }
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
352
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
353 # compiling a theano function `train_model` that returns the cost, but in
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
354 # the same time updates the parameter of the model based on the rules
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
355 # defined in `updates`
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
356 train_model = theano.function([x, y], cost, updates = updates )
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
357
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
358
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
359
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
360
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
361
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
362
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
363
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
364
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
365
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
366 #conditions for stopping the adaptation:
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
367 #1) we have reached nb_max_exemples (this is rounded up to be a multiple of the train size so we always do at least 1 epoch)
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
368 #2) validation error is going up twice in a row(probable overfitting)
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
369
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
370 # This means we no longer stop on slow convergence as low learning rates stopped
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
371 # too fast but instead we will wait for the valid error going up 3 times in a row
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
372 # We save the curb of the validation error so we can always go back to check on it
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
373 # and we save the absolute best model anyway, so we might as well explore
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
374 # a bit when diverging
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
375
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
376 #approximate number of samples in the nist training set
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
377 #this is just to have a validation frequency
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
378 #roughly proportionnal to the original nist training set
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
379 n_minibatches = 650000/batch_size
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
380
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
381
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
382 patience =2*nb_max_exemples/batch_size #in units of minibatch
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
383 validation_frequency = n_minibatches/4
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
384
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
385
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
386
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
387
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
388
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
389 best_validation_loss = float('inf')
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
390 best_iter = 0
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
391 test_score = 0.
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
392 start_time = time.clock()
212
e390b0454515 added classic lr time decay and py code to calculate the error based on a saved model
xaviermuller
parents: 169
diff changeset
393 time_n=0 #in unit of exemples
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
394 minibatch_index=0
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
395 epoch=0
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
396 temp=0
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
397 divergence_flag=0
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
398
212
e390b0454515 added classic lr time decay and py code to calculate the error based on a saved model
xaviermuller
parents: 169
diff changeset
399
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
400
355
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
401
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
402 print 'starting training'
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
403 sys.stdout.flush()
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
404 while(minibatch_index*batch_size<nb_max_exemples):
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
405
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
406 for x, y in dataset.train(batch_size):
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
407
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
408 #if we are using the classic learning rate deacay, adjust it before training of current mini-batch
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
409 if adaptive_lr==2:
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
410 classifier.lr.value = tau*initial_lr/(tau+time_n)
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
411
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
412
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
413 #train model
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
414 cost_ij = train_model(x,y)
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
415
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
416 if (minibatch_index) % validation_frequency == 0:
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
417 #save the current learning rate
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
418 learning_rate_list.append(classifier.lr.value)
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
419 divergence_flag_list.append(divergence_flag)
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
420
355
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
421
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
422
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
423 # compute the validation error
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
424 this_validation_loss = 0.
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
425 temp=0
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
426 for xv,yv in dataset.valid(1):
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
427 # sum up the errors for each minibatch
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
428 this_validation_loss += test_model(xv,yv)
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
429 temp=temp+1
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
430 # get the average by dividing with the number of minibatches
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
431 this_validation_loss /= temp
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
432 #save the validation loss
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
433 total_validation_error_list.append(this_validation_loss)
355
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
434
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
435 print(('epoch %i, minibatch %i, learning rate %f current validation error %f ') %
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
436 (epoch, minibatch_index+1,classifier.lr.value,
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
437 this_validation_loss*100.))
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
438 sys.stdout.flush()
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
439
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
440 #save temp results to check during training
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
441 numpy.savez('temp_results.npy',config=configuration,total_validation_error_list=total_validation_error_list,\
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
442 learning_rate_list=learning_rate_list, divergence_flag_list=divergence_flag_list)
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
443
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
444 # if we got the best validation score until now
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
445 if this_validation_loss < best_validation_loss:
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
446 # save best validation score and iteration number
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
447 best_validation_loss = this_validation_loss
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
448 best_iter = minibatch_index
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
449 #reset divergence flag
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
450 divergence_flag=0
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
451
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
452 #save the best model. Overwrite the current saved best model so
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
453 #we only keep the best
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
454 numpy.savez('best_model.npy', config=configuration, W1=classifier.W1.value, W2=classifier.W2.value, b1=classifier.b1.value,\
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
455 b2=classifier.b2.value, minibatch_index=minibatch_index)
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
456
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
457 # test it on the test set
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
458 test_score = 0.
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
459 temp =0
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
460 for xt,yt in dataset.test(batch_size):
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
461 test_score += test_model(xt,yt)
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
462 temp = temp+1
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
463 test_score /= temp
355
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
464
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
465 print(('epoch %i, minibatch %i, test error of best '
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
466 'model %f %%') %
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
467 (epoch, minibatch_index+1,
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
468 test_score*100.))
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
469 sys.stdout.flush()
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
470
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
471 # if the validation error is going up, we are overfitting (or oscillating)
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
472 # check if we are allowed to continue and if we will adjust the learning rate
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
473 elif this_validation_loss >= best_validation_loss:
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
474
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
475
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
476 # In non-classic learning rate decay, we modify the weight only when
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
477 # validation error is going up
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
478 if adaptive_lr==1:
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
479 classifier.lr.value=classifier.lr.value*lr_t2_factor
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
480
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
481
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
482 #cap the patience so we are allowed to diverge max_div_count times
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
483 #if we are going up max_div_count in a row, we will stop immediatelty by modifying the patience
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
484 divergence_flag = divergence_flag +1
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
485
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
486
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
487 #calculate the test error at this point and exit
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
488 # test it on the test set
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
489 test_score = 0.
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
490 temp=0
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
491 for xt,yt in dataset.test(batch_size):
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
492 test_score += test_model(xt,yt)
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
493 temp=temp+1
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
494 test_score /= temp
355
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
495
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
496 print ' validation error is going up, possibly stopping soon'
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
497 print((' epoch %i, minibatch %i, test error of best '
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
498 'model %f %%') %
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
499 (epoch, minibatch_index+1,
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
500 test_score*100.))
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
501 sys.stdout.flush()
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
502
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
503
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
504
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
505 # check early stop condition
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
506 if divergence_flag==max_div_count:
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
507 minibatch_index=nb_max_exemples
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
508 print 'we have diverged, early stopping kicks in'
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
509 break
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
510
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
511 #check if we have seen enough exemples
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
512 #force one epoch at least
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
513 if epoch>0 and minibatch_index*batch_size>nb_max_exemples:
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
514 break
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
515
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
516
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
517
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
518
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
519
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
520 time_n= time_n + batch_size
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
521 minibatch_index = minibatch_index + 1
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
522
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
523 # we have finished looping through the training set
322
743907366476 code clean up in progress
xaviermuller
parents: 304
diff changeset
524 epoch = epoch+1
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
525 end_time = time.clock()
355
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
526
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
527 print(('Optimization complete. Best validation score of %f %% '
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
528 'obtained at iteration %i, with test performance %f %%') %
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
529 (best_validation_loss * 100., best_iter, test_score*100.))
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
530 print ('The code ran for %f minutes' % ((end_time-start_time)/60.))
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
531 print minibatch_index
76b7182dd32e added support for pnist in iterator. corrected a print bug in mlp
xaviermuller
parents: 349
diff changeset
532 sys.stdout.flush()
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
533
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
534 #save the model and the weights
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
535 numpy.savez('model.npy', config=configuration, W1=classifier.W1.value,W2=classifier.W2.value, b1=classifier.b1.value,b2=classifier.b2.value)
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
536 numpy.savez('results.npy',config=configuration,total_train_error_list=total_train_error_list,total_validation_error_list=total_validation_error_list,\
323
7a7615f940e8 finished code clean up and testing
xaviermuller
parents: 322
diff changeset
537 learning_rate_list=learning_rate_list, divergence_flag_list=divergence_flag_list)
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
538
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
539 return (best_training_error*100.0,best_validation_loss * 100.,test_score*100.,best_iter*batch_size,(end_time-start_time)/60)
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
540
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
541
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
542 if __name__ == '__main__':
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
543 mlp_full_mnist()
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
544
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
545 def jobman_mlp_full_nist(state,channel):
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
546 (train_error,validation_error,test_error,nb_exemples,time)=mlp_full_nist(learning_rate=state.learning_rate,\
304
1e4bf5a5b46d added type 2 adaptive learning configurable learning weight + versionning
xaviermuller
parents: 237
diff changeset
547 nb_max_exemples=state.nb_max_exemples,\
1e4bf5a5b46d added type 2 adaptive learning configurable learning weight + versionning
xaviermuller
parents: 237
diff changeset
548 nb_hidden=state.nb_hidden,\
1e4bf5a5b46d added type 2 adaptive learning configurable learning weight + versionning
xaviermuller
parents: 237
diff changeset
549 adaptive_lr=state.adaptive_lr,\
1e4bf5a5b46d added type 2 adaptive learning configurable learning weight + versionning
xaviermuller
parents: 237
diff changeset
550 tau=state.tau,\
1e4bf5a5b46d added type 2 adaptive learning configurable learning weight + versionning
xaviermuller
parents: 237
diff changeset
551 verbose = state.verbose,\
324
1763c64030d1 fixed bug in jobman interface
xaviermuller
parents: 323
diff changeset
552 lr_t2_factor=state.lr_t2_factor,
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
553 data_set=state.data_set,
378
60a4432b8071 added initial model for weights in jobman
xaviermuller
parents: 355
diff changeset
554 init_model=state.init_model,
338
fca22114bb23 added async save, restart from old model and independant error calculation based on Arnaud's iterator
xaviermuller
parents: 324
diff changeset
555 channel=channel)
143
f341a4efb44a added adaptive lr, weight file save, traine error and error curves
XavierMuller
parents: 110
diff changeset
556 state.train_error=train_error
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
557 state.validation_error=validation_error
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
558 state.test_error=test_error
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
559 state.nb_exemples=nb_exemples
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
560 state.time=time
304
1e4bf5a5b46d added type 2 adaptive learning configurable learning weight + versionning
xaviermuller
parents: 237
diff changeset
561 pylearn.version.record_versions(state,[theano,ift6266,pylearn])
110
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
562 return channel.COMPLETE
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
563
93b4b84d86cf added simple mlp file
XavierMuller
parents:
diff changeset
564