--- a/doc/formulas.txt	Wed Oct 06 15:21:02 2010 -0400
+++ b/doc/formulas.txt	Thu Oct 07 16:42:12 2010 -0400
@@ -5,13 +5,18 @@
 ==========
 .. taglist:: 
 
+pylearn.formulas.activations
+----------------------------
+.. automodule:: pylearn.formulas.activations
+    :members:
+
 pylearn.formulas.costs
------------------------
+----------------------
 .. automodule:: pylearn.formulas.costs
     :members:
 
 pylearn.formulas.noise
------------------------
+----------------------
 .. automodule:: pylearn.formulas.noise
     :members:
  

--- a/pylearn/formulas/activations.py	Wed Oct 06 15:21:02 2010 -0400
+++ b/pylearn/formulas/activations.py	Thu Oct 07 16:42:12 2010 -0400
@@ -13,13 +13,161 @@
 
 import tags
 
+
+
+@tags.tags('activation', 'unary',
+           'sigmoid', 'logistic',
+           'non-negative', 'increasing')
+def sigmoid(x):
+    """
+    Return a symbolic variable representing the sigmoid (logistic)
+    function of the input x.
+
+    .. math::
+        \\textrm{sigmoid}(x) = \\frac{1}{1 + e^x}
+
+    The image of :math:`\\textrm{sigmoid}(x)` is the open interval (0,
+    1), *in theory*. *In practice*, due to rounding errors in floating
+    point representations, :math:`\\textrm{sigmoid}(x)` will lie in the
+    closed range [0, 1].
+
+    :param x: tensor-like (a Theano variable with type theano.Tensor,
+              or a value that can be converted to one) :math:`\in
+              \mathbb{R}^n`
+
+    :return: a Theano variable with the same shape as the input, where
+             the sigmoid function is mapped to each element of the
+             input x.
+    """
+    return theano.tensor.nnet.sigmoid(x)
+
+
+
+@tags.tags('activation', 'unary',
+           'tanh', 'hyperbolic tangent',
+           'odd', 'increasing')
+def tanh(x):
+    """
+    Return a symbolic variable representing the tanh (hyperbolic
+    tangent) of the input x.
+
+    .. math::
+        \\textrm{tanh}(x) = \\frac{e^{2x} - 1}{e^{2x} + 1}
+
+    The image of :math:`\\textrm{tanh}(x)` is the open interval (-1,
+    1), *in theory*. *In practice*, due to rounding errors in floating
+    point representations, :math:`\\textrm{tanh}(x)` will lie in the
+    closed range [-1, 1].
+
+    :param x: tensor-like (a Theano variable with type theano.Tensor,
+              or a value that can be converted to one) :math:`\in
+              \mathbb{R}^n`
+
+    :return: a Theano variable with the same shape as the input, where
+             the tanh function is mapped to each element of the input
+             x.
+    """
+    return theano.tensor.tanh(x)
+
+
+
+@tags.tags('activation', 'unary',
+           'tanh', 'hyperbolic tangent', 'normalized',
+           'odd', 'increasing')
+def tanh_normalized(x):
+    """
+    Return a symbolic variable representing a normalized tanh
+    (hyperbolic tangent) of the input x.
+    TODO: where does 1.759 come from? why is it normalized like that?
+
+    .. math::
+        \\textrm{tanh\_normalized}(x) = 1.759\\textrm{ tanh}\left(\\frac{2x}{3}\\right)
+
+    The image of :math:`\\textrm{tanh\_normalized}(x)` is the open
+    interval (-1.759, 1.759), *in theory*. *In practice*, due to
+    rounding errors in floating point representations,
+    :math:`\\textrm{tanh\_normalized}(x)` will lie in the approximative
+    closed range [-1.759, 1.759]. The exact bound depends on the
+    precision of the floating point representation.
+
+    :param x: tensor-like (a Theano variable with type theano.Tensor,
+              or a value that can be converted to one) :math:`\in
+              \mathbb{R}^n`
+
+    :return: a Theano variable with the same shape as the input, where
+             the tanh\_normalized function is mapped to each element of
+             the input x.
+    """
+    return 1.759*theano.tensor.tanh(0.6666*x)
+
+
+
+@tags.tags('activation', 'unary',
+           'abs_tanh', 'abs', 'tanh', 'hyperbolic tangent',
+           'non-negative', 'even')
+def abs_tanh(x):
+    """
+    Return a symbolic variable representing the absolute value of the
+    hyperbolic tangent of x.
+
+    .. math::
+        \\textrm{abs\_tanh}(x) = |\\textrm{tanh}(x)|
+
+    The image of :math:`\\textrm{abs\_tanh}(x)` is the interval [0, 1),
+    *in theory*. *In practice*, due to rounding errors in floating
+    point representations, :math:`\\textrm{abs\_tanh}(x)` will lie in
+    the range [0, 1].
+
+    :param x: tensor-like (a Theano variable with type theano.Tensor,
+              or a value that can be converted to one) :math:`\in
+              \mathbb{R}^n`
+
+    :return: a Theano variable with the same shape as the input, where
+             the abs_tanh function is mapped to each element of the
+             input x.
+    """
+    return theano.tensor.abs_(theano.tensor.tanh(x))
+
+
+
+@tags.tags('activation', 'unary',
+           'abs_tanh', 'abs', 'tanh', 'hyperbolic tangent', 'normalized',
+           'non-negative', 'even')
+def abs_tanh_normalized(x):
+    """
+    Return a symbolic variable representing the absolute value of a
+    normalized tanh (hyperbolic tangent) of the input x.
+    TODO: where does 1.759 come from? why is it normalized like that?
+
+    .. math::
+        \\textrm{abs\_tanh\_normalized}(x) = \left|1.759\\textrm{ tanh}\left(\\frac{2x}{3}\\right)\\right|
+
+    The image of :math:`\\textrm{abs\_tanh\_normalized}(x)` is the range
+    [0, 1.759), *in theory*. *In practice*, due to rounding errors in
+    floating point representations,
+    :math:`\\textrm{abs\_tanh\_normalized}(x)` will lie in the
+    approximative closed range [0, 1.759]. The exact upper bound
+    depends on the precision of the floating point representation.
+
+    :param x: tensor-like (a Theano variable with type theano.Tensor,
+              or a value that can be converted to one) :math:`\in
+              \mathbb{R}^n`
+
+    :return: a Theano variable with the same shape as the input, where
+             the abs_tanh_normalized function is mapped to each
+             element of the input x.
+    """
+    return theano.tensor.abs_(1.759*theano.tensor.tanh(0.6666*x))
+
+
+
 @tags.tags('activation','softsign')
 def softsign_act(input):
     """
     Returns a symbolic variable that computes the softsign of ``input``.
     
     .. math::
-                f(input) = \frac{input}{1.0 + |input|}
+                f(input) = \\frac{input}{1.0 + |input|}
 
     :type input:  tensor-like
     :param input: input tensor to which softsign should be applied
@@ -36,7 +184,7 @@
     softsign function on the input tensor ``input``.
 
     .. math::
-                f(input) = \left| \frac{input}{1.0 +|input|} \right|
+                f(input) = \left| \\frac{input}{1.0 +|input|} \\right|
 
     :type input:  tensor-like
     :param input: input tensor to which softsign should be applied
@@ -54,11 +202,11 @@
     and only if it is positive, 0 otherwise.
 
     .. math::
-                f(input) = \left\lbrace \begin{array}{l}
-                            input \quad \text{ if } input > 0 \\
-                            0     \quad \text{ else }
+                f(input) = \left \lbrace \\begin{array}{l}
+                            input \quad \\text{ if } input > 0 \\
+                            0     \quad \\text{ else }
                          \end{array}
-                         \right
+                         \\right \}
 
     :type input:  tensor-like
     :param input: input tensor to which the rectifier activation function 
@@ -78,7 +226,7 @@
            at initialization.
 
     .. math::
-                f(input) = ln \left( 1 + e^{input} \right)
+                f(input) = ln \left( 1 + e^{input} \\right)
 
     :type input:  tensor-like
     :param input: input tensor to which the softplus should be applied