Mercurial > pylearn
view pylearn/sampling/tests/test_mcmc.py @ 1447:fbe470217937
Use .get_value() and .set_value() of shared instead of the .value property
author | Pascal Lamblin <lamblinp@iro.umontreal.ca> |
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date | Wed, 16 Mar 2011 20:20:02 -0400 |
parents | 492473059b37 |
children |
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from pylearn.sampling.mcmc import * def _sampler_on_2d_gaussian(sampler_cls, burnin, n_samples): batchsize=3 rng = np.random.RandomState(234) # # Define a covariance and mu for a gaussian # tmp = rng.randn(2,2) tmp[0] += tmp[1] #induce some covariance cov = np.dot(tmp, tmp.T) cov_inv = np.linalg.inv(cov) mu = np.asarray([5, 9.5], dtype=theano.config.floatX) def gaussian_energy(xlist): x, = xlist return 0.5 * (TT.dot((x-mu),cov_inv)*(x-mu)).sum(axis=1) position = shared(rng.randn(batchsize, 2).astype(theano.config.floatX)) sampler = sampler_cls([position], gaussian_energy) print 'initial position', position.get_value(borrow=True) print 'initial stepsize', sampler.stepsize # DRAW SAMPLES samples = [sampler.draw() for r in xrange(burnin)] #burn-in samples = np.asarray([sampler.draw() for r in xrange(n_samples)]) assert sampler.avg_acceptance_rate > 0 assert sampler.avg_acceptance_rate < 1 # TEST THAT THEY ARE FROM THE RIGHT DISTRIBUTION # samples.shape == (1000, 1, 3, 2) print 'target mean:', mu print 'empirical mean: ', samples.mean(axis=0)[0] #assert np.all(abs(mu - samples.mean(axis=0)) < 1) print 'final stepsize', sampler.stepsize print 'final acceptance_rate', sampler.avg_acceptance_rate print 'target cov', cov s = samples[:,0,0,:] empirical_cov = np.cov(samples[:,0,0,:].T) print '' print 'cov/empirical_cov', cov/empirical_cov empirical_cov = np.cov(samples[:,0,1,:].T) print 'cov/empirical_cov', cov/empirical_cov empirical_cov = np.cov(samples[:,0,2,:].T) print 'cov/empirical_cov', cov/empirical_cov return sampler def test_mcmc(): print ('MCMC') sampler = _sampler_on_2d_gaussian(MCMC_sampler, burnin=3000, n_samples=90000)