annotate doc/v2_planning/API_coding_style.txt @ 1232:d94d1675c7e6

coding_style: Deleted outdated note
author Olivier Delalleau <delallea@iro>
date Thu, 23 Sep 2010 09:47:09 -0400
parents 5783948b3f8c
children 23f63ecf0a9a
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1 =========================
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2 Coding Style Guidelines
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3 =========================
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4
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5 Main Goals
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6 ==========
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7
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8 * Code should be compatible with Python 2.4 and above (using 2to3 for
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9 conversion to Python 3.x). This may not be possible in the short term
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10 for Theano-dependent code.
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11
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12 * Code should be easy to read, understand and update by developers and
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13 users.
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14
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15 * Code should be well-documented and well-tested.
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16
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17 Python Coding Guidelines
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18 ========================
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19
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20 Official Guidelines
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21 -------------------
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22
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23 Source Material
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24 ~~~~~~~~~~~~~~~
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25
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26 The four main documents describing our Python coding guidelines are:
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27 * `PEP 8 -- Style Guide for Python Code
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28 <http://www.python.org/dev/peps/pep-0008>`_
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29 * `Google Python Style Guide
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30 <http://google-styleguide.googlecode.com/svn/trunk/pyguide.html>`_
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31 * `PEP 257 -- Docstring Conventions
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32 <http://www.python.org/dev/peps/pep-0257>`_
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33 * `Numpy Docstring Standard
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34 <http://projects.scipy.org/numpy/wiki/CodingStyleGuidelines#docstring-standard>`_
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35
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36
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37 However, there are a few points mentioned in those documents that we decided
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38 to do differently:
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39
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40 * Use only one space (not two) after a sentence-ending period in comments.
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41
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42 .. code-block:: python
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43
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44 # Good.
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45 # This is the first sentence. It is followed by a single blank space.
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46 # Bad.
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47 # This is the first sentence. It is followed by two blank spaces.
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48
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49 * You do not need to add an extra blank line before the closing quotes of
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50 a multi-line docstring. Also, we ask that the first line of a multi-line
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51 docstring should contain only the opening quotes.
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52
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53 .. code-block:: python
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54
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55 # Good.
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56 """
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57 This is a multi-line docstring.
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58
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59 Which means it has more than one line.
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60 """
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61
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62 # Bad.
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63 """This is a multi-line docstring.
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64
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65 Which means it has more than one line.
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66
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67 """
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68
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69 * Standard library imports can (and should) be on the same line, to avoid
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70 wasting space on straighforward imports:
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71
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72 .. code-block:: python
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73
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74 # Good.
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75 import os, sys, time
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76 # Good when it does not fit on a single line.
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77 import std_lib_module_1, std_lib_module_2, std_lib_module_3
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78 import std_lib_module_4, std_lib_module_5, std_lib_module_6
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79 # Bad.
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80 import os
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81 import sys
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82 import time
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83
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84 * Importing class / functions from a module is allowed when these are
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85 used multiple times, and no ambiguity is possible.
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86
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87 .. code-block:: python
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88
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89 # Good when Bar and Blah are used many times.
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90 from foo import Bar, Blah
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91 do_something_with(Bar(), Blah(), Bar(), Blah(), Bar(), Blah())
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92 # Good in most situations.
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93 import foo
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94 do_something_with(foo.Bar(), foo.Blah())
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95 # Bad.
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96 from foo import *
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97 from numpy import any # Potential ambiguity with __builtin__.any
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98
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99 Excerpts
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100 ~~~~~~~~
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101
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102 We emphasize here a few important topics that are found in the official
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103 guidelines:
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104
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105 * Only use ASCII characters in code files.
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106
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107 * Code indent must be done with four blank characters (no tabs).
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108
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109 * Limit lines to 79 characters.
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110
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111 * Naming conventions: ``ClassName``, ``TOP_LEVEL_CONSTANT``,
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112 ``everything_else``.
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113
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114 * Comments should start with a capital letter (unless the first word is a
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115 code identifier) and end with a period (short inline comments may skip
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116 the period at the end).
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117
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118 * Imports should be listed in alphabetical order. It makes it easier to
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119 verify that something is imported, and avoids duplicated imports.
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120
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121 * Use absolute imports only. This is compatible across a wider range of
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122 Python versions, and avoids confusion about what is being
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123 imported.
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124
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125 * Avoid renaming imported modules. This makes code more difficult to
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126 re-use, and is not grep-friendly.
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127
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128 .. code-block:: python
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129
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130 # Good.
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131 from theano import tensor
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132 # Bad.
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133 from theano import tensor as T
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134
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135 * Avoid using lists if all you care about is iterating on something. Using
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136 lists:
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137
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138 - uses more memory (and possibly more CPU if the code may break out of
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139 the iteration),
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140 - can lead to ugly code when converted to Python 3 with 2to3,
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141 - can have a different behavior if evaluating elements in the list has
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142 side effects (if you want these side effects, make it explicit by
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143 assigning the list to some variable before iterating on it).
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144
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145 +------------------------+------------------------+
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146 | Iterative version | List version |
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147 +========================+========================+
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148 | .. code-block:: python | .. code-block:: python |
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149 | | |
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150 | my_dict.iterkeys | my_dict.keys |
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151 | my_dict.itervalues | my_dict.values |
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152 | my_dict.iteritems | my_dict.items |
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153 +------------------------+------------------------+
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154 | .. code-block:: python | .. code-block:: python |
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155 | | |
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156 | itertools.ifilter | filter |
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157 | itertools.imap | map |
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158 | itertools.izip | zip |
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159 +------------------------+------------------------+
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160 | .. code-block:: python | .. code-block:: python |
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161 | | |
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162 | xrange | range |
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163 +------------------------+------------------------+
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164
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165 Code example with ``map``:
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166
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167 .. code-block:: python
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168
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169 # Good.
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170 for f_x in imap(f, x):
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171 ...
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172 all_f_x = map(f, x)
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173 map(f, x) # f has some side effect.
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174 # Bad.
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175 for element in map(f, x):
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176 ...
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177 imap(f, x)
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178
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179 * Generally prefer list comprehensions to ``map`` / ``filter``, as the former are
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180 easier to read.
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181
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182 .. code-block:: python
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183
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184 # Good.
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185 non_comments = [line.strip() for line in my_file.readlines()
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186 if not line.startswith('#')]
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187 # Bad.
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188 non_comments = map(str.strip,
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189 ifilter(lambda line: not line.startswith('#'),
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190 my_file.readlines()))
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191
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192 * Use ``in`` on container objects instead of using class-specific methods:
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193 it is easier to read and may allow you to re-use your code with different
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194 container types.
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195
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196 .. code-block:: python
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197
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198 # Good.
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199 has_key = key in my_dict
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200 has_substring = substring in my_string
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201 # Bad.
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202 has_key = my_dict.has_key(key)
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203 has_substring = my_string.find(substring) >= 0
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204
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205 * Do not use mutable arguments as default values. Instead, use a helper
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206 function (conditional expressions are forbidden at this point, see
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207 below).
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208
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209 .. code-block:: python
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210
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211 # Good.
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212 def f(array=None):
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213 array = pylearn.if_none(array, [])
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214 ...
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215 # Bad.
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216 def f(array=[]): # Dangerous if `array` is modified down the road.
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217 ...
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218
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219 * Always raise an exception with ``raise MyException(args)`` where ``MyException``
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220 inherits from ``Exception``. This is required for compatibility across
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221 all versions of Python.
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222
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223 .. code-block:: python
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224
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225 # Good.
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226 raise NotImplementedError('The Pylearn team is too lazy.')
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227 # Bad.
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228 raise NotImplementedError, 'The Pylearn team is too lazy.'
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229 raise 'The Pylearn team is too lazy to implement this.'
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230
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231 * Use a leading underscore '_' in names of internal attributes / methods,
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232 but avoid the double underscore '__' unless you know what you are
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233 doing.
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234
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235
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236 Additional Recommendations
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237 --------------------------
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238
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239 Things you should do even if they are not listed in official guidelines:
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240
1162
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241 * All Python code files should start like this:
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242
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243 .. code-block:: python
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244
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245 """Module docstring as the first line, as usual."""
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246
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247 __authors__ = "Olivier Delalleau, Frederic Bastien, David Warde-Farley"
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248 __copyright__ = "(c) 2010, Universite de Montreal"
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249 __license__ = "3-clause BSD License"
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250 __contact__ = "Name Of Current Guardian of this file <email@address>"
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251
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252 * Use ``//`` for integer division and ``/ float(...)`` if you want the
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253 floating point operation (for readability and compatibility across all
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254 versions of Python).
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255
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256 .. code-block:: python
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257
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258 # Good.
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259 n_samples_per_split = n_samples // n_splits
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260 mean_x = sum(x) / float(len(x))
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261 # Bad.
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262 n_samples_per_split = n_samples / n_splits
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263 mean_x = sum(x) / len(x)
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264
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265 * Use either ``try ... except`` or ``try ... finally``, but do not mix
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266 ``except`` with ``finally`` (which is not supported in Python 2.4).
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267 You can however embed one into the other to mimic the ``try ... except ...
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268 finally`` behavior.
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269
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270 .. code-block:: python
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271
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272 # Good.
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273 try:
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274 try:
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275 something_that_may_fail()
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276 except SomeError:
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277 do_something_if_it_failed()
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278 finally:
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279 always_do_this_regardless_of_what_happened()
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280 # Bad.
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281 try:
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282 something_that_may_fail()
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283 except SomeError:
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284 do_something_if_it_failed()
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285 finally:
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286 always_do_this_regardless_of_what_happened()
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287
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288 * No conditional expression (not supported in Python 2.4). These are
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289 expressions of the form ``x = y if condition else z``.
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290
1159
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291 * Do not use the ``all`` and ``any`` builtin functions (they are not supported
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292 in Python 2.4). Instead, import them from ``theano.gof.python25`` (or
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293 use ``numpy.all`` / ``numpy.any`` for array data).
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294
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295 * Do not use the ``hashlib`` module (not supported in Python 2.4). We will
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296 probably provide a wrapper around it to be compatible with all Python
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297 versions.
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298
1162
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299 * Use ``numpy.inf`` and ``numpy.nan`` rather than
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300 ``float('inf')`` / ``float('nan')`` (should be slightly more efficient even
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301 if efficiency is typically not an issue here, the main goal being code
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302 consistency). Also, always use ``numpy.isinf`` / ``numpy.isnan`` to
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303 test infinite / NaN values. This is important because ``numpy.nan !=
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304 float('nan')``.
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305
1145
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306 * Avoid backslashes whenever possible. They make it more
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307 difficult to edit code, and they are ugly (as well as potentially
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308 dangerous if there are trailing white spaces).
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309
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310 .. code-block:: python
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311
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312 # Good.
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313 if (cond_1 and
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314 cond_2 and
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315 cond_3):
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316
1180
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317 # Note that we added a blank line above to avoid confusion between
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318 # conditions and the rest of the code (this would not have been
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319 # needed if they were at significantly different indentation levels).
1145
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320 ...
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321 # Bad.
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322 if cond_1 and \
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323 cond_2 and \
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324 cond_3:
1180
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325
1145
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326 ...
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327
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328 * When indenting multi-line statements like lists or function arguments,
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329 keep elements of the same level aligned with each other.
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330 The position of the first
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331 element (on the same line or a new line) should be chosen depending on
d6d73a9f07b8 API_coding_style: Started to work on official guidelines
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332 what is easiest to read (sometimes both can be ok).
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333
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334 .. code-block:: python
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335
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336 # Good.
1150
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337 for my_very_long_variable_name in [my_foo, my_bar, my_love,
1145
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338 my_everything]:
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339 ...
d6d73a9f07b8 API_coding_style: Started to work on official guidelines
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340 for my_very_long_variable_name in [
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341 my_foo, my_bar, my_love, my_everything]:
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342 ...
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343 # Good iff the list needs to be frequently updated or is easier to
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344 # understand when each element is on its own line.
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345 for my_very_long_variable_name in [
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346 my_foo,
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347 my_bar,
d6d73a9f07b8 API_coding_style: Started to work on official guidelines
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348 my_love,
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349 my_everything,
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350 ]:
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351 ...
1150
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352 # Good as long as it does not require more than two lines.
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353 for my_very_long_variable_name in [my_foo,
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354 my_bar]:
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355 ...
1145
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356 # Bad.
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357 for my_very_long_variable_name in [my_foo, my_bar, my_love,
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358 my_everything]:
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359 ...
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360 for my_very_long_variable_name in [my_foo,
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361 my_bar,
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362 my_love,
d6d73a9f07b8 API_coding_style: Started to work on official guidelines
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363 my_everything]:
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parents: 1143
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364 ...
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365
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366 * Use the ``key`` argument instead of ``cmp`` when sorting (for Python 3
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367 compatibility).
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368
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369 .. code-block:: python
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370
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371 # Good.
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372 my_list.sort(key=abs)
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373 # Bad.
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374 my_list.sort(cmp=lambda x, y: cmp(abs(x), abs(y)))
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375
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376 * Whenever you read / write binary files, specify it in the mode ('rb' for
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377 reading, 'wb' for writing). This is important for cross-platform and
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378 Python 3 compatibility (e.g. when pickling / unpickling objects).
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379
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380 .. code-block:: python
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381
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382 # Good.
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383 cPickle.dump(obj, open('my_obj.pkl', 'wb', protocol=-1))
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384 # Bad.
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385 cPickle.dump(obj, open('my_obj.pkl', 'w', protocol=-1))
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386
531e77fb67f2 coding_style: Moved more elements to official 'API'
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387 * Avoid tuple parameter unpacking as it can lead to very ugly code when
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388 converting to Python 3.
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diff changeset
389
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390 .. code-block:: python
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diff changeset
391
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392 # Good.
531e77fb67f2 coding_style: Moved more elements to official 'API'
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393 def f(x, y_z):
531e77fb67f2 coding_style: Moved more elements to official 'API'
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394 y, z = y_z
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diff changeset
395 ...
531e77fb67f2 coding_style: Moved more elements to official 'API'
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396 # Bad.
531e77fb67f2 coding_style: Moved more elements to official 'API'
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diff changeset
397 def f(x, (y, z)):
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diff changeset
398 ...
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diff changeset
399
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400 * Only use ``cPickle``, not ``pickle`` (except for debugging purpose since
531e77fb67f2 coding_style: Moved more elements to official 'API'
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401 error messages from ``pickle`` are sometimes easier to understand).
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402
531e77fb67f2 coding_style: Moved more elements to official 'API'
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403 * A script's only top-level code should be something like:
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diff changeset
404
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405 .. code-block:: python
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diff changeset
406
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407 if __name__ == '__main__':
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408 sys.exit(main())
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diff changeset
409
1150
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410
1147
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411 The ``logging`` Module vs. the ``warning`` Module
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412 =================================================
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413
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414 The ``logging`` Module
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415 ----------------------
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416
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417 A central logging facility for Python capable of logging messages of various
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418 categories/urgency and choosing with some granularity which messages are
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419 displayed/suppressed, as well as where they are displayed or written. This
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420 includes an ``INFO`` level for innocuous status information, a ``WARNING`` level
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421 for unexpected state that is still recoverable, ``DEBUG`` for detailed
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422 information which is only really of interest when things are going wrong, etc.
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423
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424 In addition to the `library documentation`_, see this helpful tutorial,
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425 `Python Logging 101`_.
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426
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427 .. _library documentation: http://docs.python.org/library/logging.html
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428 .. _Python Logging 101: http://plumberjack.blogspot.com/2009/09/python-logging-101.html
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429
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430 The ``warning`` Module
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431 ----------------------
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432
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433 The ``warning`` module in the standard library and its main interface, the
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434 ``warn()`` function, allows the programmer to issue warnings in situations where
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435 they wish to alert the user to some condition, but the situation is not
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436 urgent enough to throw an exception. By default, a warning issued at a given
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437 line of the code will only be displayed the first time that line is executed.
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438 By default, warnings are written to ``sys.stderr`` but the ``warning`` module
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439 contains flexible facilities for altering the defaults, redirecting, etc.
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440
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441 Which? When?
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442 ------------
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443
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444 It is our feeling that the ``logging`` module's ``WARNING`` level be used to log
f6011a2aff0b coding_style: Moved David's comments from coding_style.txt to API_coding_style.txt
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445 warnings more meant for *internal*, *developer* consumption, to log situations
f6011a2aff0b coding_style: Moved David's comments from coding_style.txt to API_coding_style.txt
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446 where something unexpected happened that may be indicative of a problem but
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447 is several layers of abstraction below what a user of the library would
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448 care about.
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449
f6011a2aff0b coding_style: Moved David's comments from coding_style.txt to API_coding_style.txt
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450 By contrast, the warning module should be used for warnings intended for user
f6011a2aff0b coding_style: Moved David's comments from coding_style.txt to API_coding_style.txt
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451 consumption, e.g. alerting them that their version of Pylearn is older than
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452 this plugin requires, so things may not work as expected, or that a given
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453 function/class/method is slated for deprecation in a coming release (early
f6011a2aff0b coding_style: Moved David's comments from coding_style.txt to API_coding_style.txt
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454 in the library's lifetime, ``DeprecationWarning`` will likely be the most common
f6011a2aff0b coding_style: Moved David's comments from coding_style.txt to API_coding_style.txt
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455 case). The warning message issued through this facility should avoid
f6011a2aff0b coding_style: Moved David's comments from coding_style.txt to API_coding_style.txt
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456 referring to Pylearn internals.
f6011a2aff0b coding_style: Moved David's comments from coding_style.txt to API_coding_style.txt
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457
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458 Code Sample
2da593b0f29d API_coding_style: Moved code sample at end of document for better readability
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459 ===========
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460
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461 The following code sample illustrates some of the coding guidelines one should
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462 follow in Pylearn. This is still a work-in-progress.
1148
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463
2da593b0f29d API_coding_style: Moved code sample at end of document for better readability
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464 .. code-block:: python
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465
1170
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466 #! /usr/env/bin python
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467
53340a8df1fa coding_style: Started to write full code sample
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468 """Sample code. There may still be mistakes / missing elements."""
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469
53340a8df1fa coding_style: Started to write full code sample
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470 __authors__ = "Olivier Delalleau"
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471 __copyright__ = "(c) 2010, Universite de Montreal"
53340a8df1fa coding_style: Started to write full code sample
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472 __license__ = "3-clause BSD License"
53340a8df1fa coding_style: Started to write full code sample
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473 __contact__ = "Olivier Delalleau <delallea@iro>"
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474
53340a8df1fa coding_style: Started to write full code sample
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475 # Standard library imports are on a single line.
1148
2da593b0f29d API_coding_style: Moved code sample at end of document for better readability
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476 import os, sys, time
2da593b0f29d API_coding_style: Moved code sample at end of document for better readability
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477
1170
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478 # Third-party imports come after standard library imports, and there is
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479 # only one import per line. Imports are sorted lexicographically.
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480 import numpy
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481 import scipy
53340a8df1fa coding_style: Started to write full code sample
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482 import theano
53340a8df1fa coding_style: Started to write full code sample
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483 # Put 'from' imports below.
53340a8df1fa coding_style: Started to write full code sample
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484 from numpy import argmax
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485 from theano import tensor
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486
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487 # Application-specific imports come last.
53340a8df1fa coding_style: Started to write full code sample
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diff changeset
488 from pylearn import dataset
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diff changeset
489 from pylearn.optimization import minimize
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490
53340a8df1fa coding_style: Started to write full code sample
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491 def print_files_in(directory):
53340a8df1fa coding_style: Started to write full code sample
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492 """Print the first line of each file in given directory."""
53340a8df1fa coding_style: Started to write full code sample
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493 # TODO To be continued...
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494
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495 def main():
53340a8df1fa coding_style: Started to write full code sample
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496 if len(sys.argv) != 2:
53340a8df1fa coding_style: Started to write full code sample
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497 # Note: conventions on how to display script documentation and
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498 # parse arguments are still to-be-determined.
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499 print("""\
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500 Usage: %s <directory>
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501 Print first line of each file in given directory (in alphabetic order)."""
53340a8df1fa coding_style: Started to write full code sample
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diff changeset
502 % os.path.basename(sys.argv[0]))
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503 return 1
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504 print_files_in(sys.argv[1])
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505 return 0
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diff changeset
506
53340a8df1fa coding_style: Started to write full code sample
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507 # Top-level executable code should be minimal.
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508 if __name__ == '__main__':
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509 sys.exit(main())
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diff changeset
510
53340a8df1fa coding_style: Started to write full code sample
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511
1162
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512 Automatic Code Verification
4f1b9e0a1377 coding_style: Moved more stuff to API
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diff changeset
513 ===========================
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514
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515 Tools will be available to make it easier to automatically ensure that code
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516 committed to Pylearn complies to above specifications. This work is not
4f1b9e0a1377 coding_style: Moved more stuff to API
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517 finalized yet, but David started a `Wiki page`_ with helpful configuration
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diff changeset
518 tips for Vim.
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519
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520 .. _Wiki page: http://www.iro.umontreal.ca/~lisa/twiki/bin/view.cgi/Divers/VimPythonRecommendations
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521
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522 TODO
4f1b9e0a1377 coding_style: Moved more stuff to API
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523 ====
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diff changeset
524
4f1b9e0a1377 coding_style: Moved more stuff to API
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525 Things still missing from this document, being discussed in coding_style.txt:
4f1b9e0a1377 coding_style: Moved more stuff to API
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526 - Proper style for C code and Mercurial commits
4f1b9e0a1377 coding_style: Moved more stuff to API
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diff changeset
527 - Enforcing 100% test coverage of the code base
4f1b9e0a1377 coding_style: Moved more stuff to API
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528 - Providing ways to add type checking for function arguments
1170
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529 - Conventions for script usage documentation and argument parsing
1178
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530 - Conventions for class / method / function documentation
10bc5ebb5823 coding_style: Added note about the need to provide guidelines for serialization-friendly code
Olivier Delalleau <delallea@iro>
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531 - Guidelines for serialization-friendly code (hint: nested and lambda
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Olivier Delalleau <delallea@iro>
parents: 1170
diff changeset
532 functions, as well as instance methods, cannot be serialized, and
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Olivier Delalleau <delallea@iro>
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diff changeset
533 apparently there are some issues with decorators -- to be investigated).
10bc5ebb5823 coding_style: Added note about the need to provide guidelines for serialization-friendly code
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parents: 1170
diff changeset
534
1162
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535