annotate sandbox/rbm/model.py @ 436:d7ed780364b3

image_tools
author Olivier Breuleux <breuleuo@iro.umontreal.ca>
date Wed, 06 Aug 2008 19:39:14 -0400
parents 4f61201fa9a9
children
rev   line source
370
a1bbcde6b456 Moved sparse_random_autoassociator from my repository
Joseph Turian <turian@gmail.com>
parents:
diff changeset
1 """
a1bbcde6b456 Moved sparse_random_autoassociator from my repository
Joseph Turian <turian@gmail.com>
parents:
diff changeset
2 The model for an autoassociator for sparse inputs, using Ronan Collobert + Jason
a1bbcde6b456 Moved sparse_random_autoassociator from my repository
Joseph Turian <turian@gmail.com>
parents:
diff changeset
3 Weston's sampling trick (2008).
a1bbcde6b456 Moved sparse_random_autoassociator from my repository
Joseph Turian <turian@gmail.com>
parents:
diff changeset
4 """
a1bbcde6b456 Moved sparse_random_autoassociator from my repository
Joseph Turian <turian@gmail.com>
parents:
diff changeset
5
a1bbcde6b456 Moved sparse_random_autoassociator from my repository
Joseph Turian <turian@gmail.com>
parents:
diff changeset
6 import parameters
372
75bab24bb2d8 Moved more logic into model.py
Joseph Turian <turian@gmail.com>
parents: 370
diff changeset
7
370
a1bbcde6b456 Moved sparse_random_autoassociator from my repository
Joseph Turian <turian@gmail.com>
parents:
diff changeset
8 import numpy
395
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
9 from numpy import dot
372
75bab24bb2d8 Moved more logic into model.py
Joseph Turian <turian@gmail.com>
parents: 370
diff changeset
10 import random
75bab24bb2d8 Moved more logic into model.py
Joseph Turian <turian@gmail.com>
parents: 370
diff changeset
11
395
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
12 import pylearn.nnet_ops
400
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
13 import pylearn.sparse_instance
395
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
14
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
15 def sigmoid(v):
400
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
16 """
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
17 @todo: Move to pylearn.more_numpy
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
18 @todo: Fix to avoid floating point overflow.
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
19 """
395
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
20 # if x < -30.0: return 0.0
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
21 # if x > 30.0: return 1.0
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
22 return 1.0 / (1.0 + numpy.exp(-v))
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
23
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
24 def sample(v):
400
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
25 """
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
26 @todo: Move to pylearn.more_numpy
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
27 """
396
e0c9357456e0 Bug fixed in RBM
Joseph Turian <turian@gmail.com>
parents: 395
diff changeset
28 assert len(v.shape) == 2
395
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
29 x = numpy.zeros(v.shape)
396
e0c9357456e0 Bug fixed in RBM
Joseph Turian <turian@gmail.com>
parents: 395
diff changeset
30 for j in range(v.shape[0]):
e0c9357456e0 Bug fixed in RBM
Joseph Turian <turian@gmail.com>
parents: 395
diff changeset
31 for i in range(v.shape[1]):
e0c9357456e0 Bug fixed in RBM
Joseph Turian <turian@gmail.com>
parents: 395
diff changeset
32 assert v[j][i] >= 0 and v[j][i] <= 1
e0c9357456e0 Bug fixed in RBM
Joseph Turian <turian@gmail.com>
parents: 395
diff changeset
33 if random.random() < v[j][i]: x[j][i] = 1
e0c9357456e0 Bug fixed in RBM
Joseph Turian <turian@gmail.com>
parents: 395
diff changeset
34 else: x[j][i] = 0
395
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
35 return x
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
36
398
6e55ccb7e2bf Better output
Joseph Turian <turian@gmail.com>
parents: 396
diff changeset
37 def crossentropy(output, target):
6e55ccb7e2bf Better output
Joseph Turian <turian@gmail.com>
parents: 396
diff changeset
38 """
6e55ccb7e2bf Better output
Joseph Turian <turian@gmail.com>
parents: 396
diff changeset
39 Compute the crossentropy of binary output wrt binary target.
6e55ccb7e2bf Better output
Joseph Turian <turian@gmail.com>
parents: 396
diff changeset
40 @note: We do not sum, crossentropy is computed by component.
6e55ccb7e2bf Better output
Joseph Turian <turian@gmail.com>
parents: 396
diff changeset
41 @todo: Rewrite as a scalar, and then broadcast to tensor.
400
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
42 @todo: Move to pylearn.more_numpy
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
43 @todo: Fix to avoid floating point overflow.
398
6e55ccb7e2bf Better output
Joseph Turian <turian@gmail.com>
parents: 396
diff changeset
44 """
6e55ccb7e2bf Better output
Joseph Turian <turian@gmail.com>
parents: 396
diff changeset
45 return -(target * numpy.log(output) + (1 - target) * numpy.log(1 - output))
6e55ccb7e2bf Better output
Joseph Turian <turian@gmail.com>
parents: 396
diff changeset
46
6e55ccb7e2bf Better output
Joseph Turian <turian@gmail.com>
parents: 396
diff changeset
47
370
a1bbcde6b456 Moved sparse_random_autoassociator from my repository
Joseph Turian <turian@gmail.com>
parents:
diff changeset
48 class Model:
400
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
49 """
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
50 @todo: input dimensions should be stored here! not as a global.
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
51 """
406
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
52 def __init__(self, input_dimension, hidden_dimension, learning_rate = 0.1, momentum = 0.9, weight_decay = 0.0002, random_seed = 666):
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
53 self.input_dimension = input_dimension
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
54 self.hidden_dimension = hidden_dimension
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
55 self.learning_rate = learning_rate
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
56 self.momentum = momentum
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
57 self.weight_decay = weight_decay
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
58 self.random_seed = random_seed
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
59
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
60 random.seed(random_seed)
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
61
417
4f61201fa9a9 Parameters are no longer global
Joseph Turian <turian@iro.umontreal.ca>
parents: 410
diff changeset
62 self.parameters = parameters.Parameters(input_dimension=self.input_dimension, hidden_dimension=self.hidden_dimension, randomly_initialize=True, random_seed=self.random_seed)
402
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
63 self.prev_dw = 0
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
64 self.prev_db = 0
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
65 self.prev_dc = 0
370
a1bbcde6b456 Moved sparse_random_autoassociator from my repository
Joseph Turian <turian@gmail.com>
parents:
diff changeset
66
402
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
67 def deterministic_reconstruction(self, v0):
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
68 """
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
69 One up-down cycle, but a mean-field approximation (no sampling).
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
70 """
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
71 q = sigmoid(self.parameters.b + dot(v0, self.parameters.w))
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
72 p = sigmoid(self.parameters.c + dot(q, self.parameters.w.T))
401
217c8789284b Small updates
Joseph Turian <turian@gmail.com>
parents: 400
diff changeset
73 return p
400
269d5c5a4209 Cleaned up, added sparse_instance
Joseph Turian <turian@gmail.com>
parents: 399
diff changeset
74
402
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
75 def deterministic_reconstruction_error(self, v0):
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
76 """
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
77 @note: According to Yoshua, -log P(V1 = v0 | tilde(h)(v0)).
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
78 """
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
79 return crossentropy(self.deterministic_reconstruction(v0), v0)
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
80
399
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
81 def update(self, instances):
372
75bab24bb2d8 Moved more logic into model.py
Joseph Turian <turian@gmail.com>
parents: 370
diff changeset
82 """
75bab24bb2d8 Moved more logic into model.py
Joseph Turian <turian@gmail.com>
parents: 370
diff changeset
83 Update the L{Model} using one training instance.
75bab24bb2d8 Moved more logic into model.py
Joseph Turian <turian@gmail.com>
parents: 370
diff changeset
84 @param instance: A dict from feature index to (non-zero) value.
75bab24bb2d8 Moved more logic into model.py
Joseph Turian <turian@gmail.com>
parents: 370
diff changeset
85 @todo: Should assert that nonzero_indices and zero_indices
75bab24bb2d8 Moved more logic into model.py
Joseph Turian <turian@gmail.com>
parents: 370
diff changeset
86 are correct (i.e. are truly nonzero/zero).
406
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
87 @todo: Multiply L{self.weight_decay} by L{self.learning_rate}, as done in Semantic Hashing?
405
be4209cd568f Added weight decay
Joseph Turian <turian@gmail.com>
parents: 402
diff changeset
88 @todo: Decay the biases too?
372
75bab24bb2d8 Moved more logic into model.py
Joseph Turian <turian@gmail.com>
parents: 370
diff changeset
89 """
399
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
90 minibatch = len(instances)
406
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
91 v0 = pylearn.sparse_instance.to_vector(instances, self.input_dimension)
410
3cd4cfda2599 XENT per instance
Joseph Turian <turian@gmail.com>
parents: 406
diff changeset
92 print "old XENT per instance:", numpy.sum(self.deterministic_reconstruction_error(v0))/minibatch
395
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
93 q0 = sigmoid(self.parameters.b + dot(v0, self.parameters.w))
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
94 h0 = sample(q0)
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
95 p0 = sigmoid(self.parameters.c + dot(h0, self.parameters.w.T))
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
96 v1 = sample(p0)
70019965f888 Basic, broken RBM implementation
Joseph Turian <turian@gmail.com>
parents: 393
diff changeset
97 q1 = sigmoid(self.parameters.b + dot(v1, self.parameters.w))
402
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
98
406
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
99 dw = self.learning_rate * (dot(v0.T, h0) - dot(v1.T, q1)) / minibatch + self.momentum * self.prev_dw
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
100 db = self.learning_rate * numpy.sum(h0 - q1, axis=0) / minibatch + self.momentum * self.prev_db
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
101 dc = self.learning_rate * numpy.sum(v0 - v1, axis=0) / minibatch + self.momentum * self.prev_dc
402
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
102
406
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
103 self.parameters.w *= (1 - self.weight_decay)
405
be4209cd568f Added weight decay
Joseph Turian <turian@gmail.com>
parents: 402
diff changeset
104
402
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
105 self.parameters.w += dw
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
106 self.parameters.b += db
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
107 self.parameters.c += dc
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
108
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
109 self.last_dw = dw
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
110 self.last_db = db
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
111 self.last_dc = dc
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
112
410
3cd4cfda2599 XENT per instance
Joseph Turian <turian@gmail.com>
parents: 406
diff changeset
113 print "new XENT per instance:", numpy.sum(self.deterministic_reconstruction_error(v0))/minibatch
402
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
114
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
115 # print
399
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
116 # print "v[0]:", v0
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
117 # print "Q(h[0][i] = 1 | v[0]):", q0
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
118 # print "h[0]:", h0
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
119 # print "P(v[1][j] = 1 | h[0]):", p0
402
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
120 # print "XENT(P(v[1][j] = 1 | h[0]) | v0):", numpy.sum(crossentropy(p0, v0))
399
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
121 # print "v[1]:", v1
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
122 # print "Q(h[1][i] = 1 | v[1]):", q1
402
ffdd2c199f2a * Added momentum.
Joseph Turian <turian@gmail.com>
parents: 401
diff changeset
123 #
399
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
124 # print
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
125 # print v0.T.shape
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
126 # print h0.shape
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
127 # print dot(v0.T, h0).shape
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
128 # print self.parameters.w.shape
406
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
129 # self.parameters.w += self.learning_rate * (dot(v0.T, h0) - dot(v1.T, q1)) / minibatch
399
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
130 # print
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
131 # print h0.shape
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
132 # print q1.shape
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
133 # print self.parameters.b.shape
406
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
134 # self.parameters.b += self.learning_rate * numpy.sum(h0 - q1, axis=0) / minibatch
399
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
135 # print v0.shape, v1.shape
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
136 # print
8796b91a9f09 RBM minibatch works
Joseph Turian <turian@gmail.com>
parents: 398
diff changeset
137 # print self.parameters.c.shape
406
c2e6a8fcc35e Globals are now parameters for the RBM model
Joseph Turian <turian@gmail.com>
parents: 405
diff changeset
138 # self.parameters.c += self.learning_rate * numpy.sum(v0 - v1, axis=0) / minibatch
398
6e55ccb7e2bf Better output
Joseph Turian <turian@gmail.com>
parents: 396
diff changeset
139 # print self.parameters