Mercurial > pylearn
annotate doc/v2_planning/API_coding_style.txt @ 1180:9ebd40d31a1b
API_coding_style: Added some comments following up on what was discussed during meeting
author | Olivier Delalleau <delallea@iro> |
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date | Fri, 17 Sep 2010 16:39:29 -0400 |
parents | 67f4edabb0cc |
children | bc1b445e22fa |
rev | line source |
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1 ========================= |
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2 Coding Style Guidelines |
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3 ========================= |
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4 |
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5 Note: until the Pylearn documentation is properly compiled, you can view |
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6 the HTML version of this document `here |
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7 <http://www.iro.umontreal.ca/~delallea/tmp/coding_style/html/API_coding_style.html>`_. |
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8 |
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9 Main Goals |
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10 ========== |
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11 |
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12 * Code should be compatible with Python 2.4 and above (using 2to3 for |
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13 conversion to Python 3.x). This may not be possible in the short term |
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14 for Theano-dependent code. |
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15 |
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16 * Code should be easy to read, understand and update by developers and |
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17 users. |
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18 |
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19 * Code should be well-documented and well-tested. |
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20 |
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21 Python Coding Guidelines |
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22 ======================== |
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23 |
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24 Official Guidelines |
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25 ------------------- |
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26 |
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27 Source Material |
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28 ~~~~~~~~~~~~~~~ |
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29 |
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30 The four main documents describing our Python coding guidelines are: |
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31 * `PEP 8 -- Style Guide for Python Code |
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32 <http://www.python.org/dev/peps/pep-0008>`_ |
1173 | 33 * `Google Python Style Guide |
34 <http://google-styleguide.googlecode.com/svn/trunk/pyguide.html>`_ | |
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35 * `PEP 257 -- Docstring Conventions |
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36 <http://www.python.org/dev/peps/pep-0257>`_ |
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37 * `Numpy Docstring Standard |
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38 <http://projects.scipy.org/numpy/wiki/CodingStyleGuidelines#docstring-standard>`_ |
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39 |
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40 |
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41 However, there are a few points mentioned in those documents that we decided |
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42 to do differently: |
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43 |
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44 * Use only one space (not two) after a sentence-ending period in comments. |
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45 |
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46 * You do not need to add an extra blank line before the closing quotes of |
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47 a multi-line docstring. Also, we ask that the first line of a multi-line |
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48 docstring should contain only the opening quotes. |
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49 |
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50 .. code-block:: python |
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51 |
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52 # Good. |
1173 | 53 """ |
54 This is a multi-line docstring. | |
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55 |
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56 Which means it has more than one line. |
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57 """ |
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58 |
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59 # Bad. |
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60 """This is a multi-line docstring. |
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61 |
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62 Which means it has more than one line. |
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63 |
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64 """ |
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65 |
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66 * Standard library imports can (and should) be on the same line, to avoid |
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67 wasting space on straighforward imports: |
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68 |
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69 .. code-block:: python |
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70 |
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71 # Good. |
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72 import os, sys, time |
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73 # Good when it does not fit on a single line. |
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74 import std_lib_module_1, std_lib_module_2, std_lib_module_3 |
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75 import std_lib_module_4, std_lib_module_5, std_lib_module_6 |
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76 # Bad. |
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77 import os |
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78 import sys |
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79 import time |
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80 |
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81 * Importing class / functions from a module is allowed when these are |
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82 used multiple times, and no ambiguity is possible. |
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83 |
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84 .. code-block:: python |
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85 |
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86 # Good when Bar and Blah are used many times. |
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87 from foo import Bar, Blah |
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88 do_something_with(Bar(), Blah(), Bar(), Blah(), Bar(), Blah()) |
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89 # Good in most situations. |
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90 import foo |
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91 do_something_with(foo.Bar(), foo.Blah()) |
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92 # Bad. |
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93 from foo import * |
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94 from numpy import any # Potential ambiguity with __builtin__.any |
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95 |
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96 Excerpts |
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97 ~~~~~~~~ |
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98 |
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99 We emphasize here a few important topics that are found in the official |
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100 guidelines: |
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101 |
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102 * Only use ASCII characters in code files. |
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103 |
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104 * Code indent must be done with four blank characters (no tabs). |
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105 |
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106 * Limit lines to 79 characters. |
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107 |
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108 * Naming conventions: ``ClassName``, ``TOP_LEVEL_CONSTANT``, |
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109 ``everything_else``. |
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110 |
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111 * Comments should start with a capital letter (unless the first word is a |
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112 code identifier) and end with a period (short inline comments may skip |
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113 the period at the end). |
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114 |
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115 * Imports should be listed in alphabetical order. It makes it easier to |
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116 verify that something is imported, and avoids duplicated imports. |
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117 |
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118 * Use absolute imports only. This is compatible across a wider range of |
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119 Python versions, and avoids confusion about what is being |
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120 imported. |
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121 |
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122 * Avoid renaming imported modules. This makes code more difficult to |
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123 re-use, and is not grep-friendly. |
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124 |
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125 .. code-block:: python |
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126 |
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127 # Good. |
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128 from theano import tensor |
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129 # Bad. |
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130 from theano import tensor as T |
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131 |
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132 * Avoid using lists if all you care about is iterating on something. Using |
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133 lists: |
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134 |
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135 - uses more memory (and possibly more CPU if the code may break out of |
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136 the iteration), |
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137 - can lead to ugly code when converted to Python 3 with 2to3, |
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138 - can have a different behavior if evaluating elements in the list has |
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139 side effects (if you want these side effects, make it explicit by |
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140 assigning the list to some variable before iterating on it). |
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141 |
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142 +------------------------+------------------------+ |
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143 | Iterative version | List version | |
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144 +========================+========================+ |
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145 | .. code-block:: python | .. code-block:: python | |
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146 | | | |
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147 | my_dict.iterkeys | my_dict.keys | |
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148 | my_dict.itervalues | my_dict.values | |
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149 | my_dict.iteritems | my_dict.items | |
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150 +------------------------+------------------------+ |
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151 | .. code-block:: python | .. code-block:: python | |
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152 | | | |
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153 | itertools.ifilter | filter | |
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154 | itertools.imap | map | |
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155 | itertools.izip | zip | |
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156 +------------------------+------------------------+ |
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157 | .. code-block:: python | .. code-block:: python | |
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158 | | | |
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159 | xrange | range | |
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160 +------------------------+------------------------+ |
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161 |
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162 Code example with ``map``: |
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163 |
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164 .. code-block:: python |
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165 |
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166 # Good. |
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167 for f_x in imap(f, x): |
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168 ... |
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169 all_f_x = map(f, x) |
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170 map(f, x) # f has some side effect. |
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171 # Bad. |
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172 for element in map(f, x): |
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173 ... |
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174 imap(f, x) |
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175 |
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176 * Generally prefer list comprehensions to ``map`` / ``filter``, as the former are |
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177 easier to read. |
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178 |
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179 .. code-block:: python |
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180 |
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181 # Good. |
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182 non_comments = [line.strip() for line in my_file.readlines() |
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183 if not line.startswith('#')] |
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184 # Bad. |
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185 non_comments = map(str.strip, |
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186 ifilter(lambda line: not line.startswith('#'), |
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187 my_file.readlines())) |
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188 |
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189 * Use ``in`` on container objects instead of using class-specific methods: |
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190 it is easier to read and may allow you to re-use your code with different |
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191 container types. |
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192 |
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193 .. code-block:: python |
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194 |
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195 # Good. |
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196 has_key = key in my_dict |
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197 has_substring = substring in my_string |
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198 # Bad. |
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199 has_key = my_dict.has_key(key) |
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200 has_substring = my_string.find(substring) >= 0 |
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201 |
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202 * Do not use mutable arguments as default values. Instead, use a helper |
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203 function (conditional expressions are forbidden at this point, see |
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204 below). |
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205 |
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206 .. code-block:: python |
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207 |
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208 # Good. |
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209 def f(array=None): |
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210 array = pylearn.if_none(array, []) |
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211 ... |
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212 # Bad. |
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213 def f(array=[]): # Dangerous if `array` is modified down the road. |
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214 ... |
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215 |
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216 * Use a leading underscore '_' in names of internal attributes / methods, |
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217 but avoid the double underscore '__' unless you know what you are |
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218 doing. |
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219 |
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220 |
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221 Additional Recommendations |
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222 -------------------------- |
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223 |
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224 Things you should do even if they are not listed in official guidelines: |
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225 |
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226 * All Python code files should start like this: |
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227 |
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228 .. code-block:: python |
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229 |
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230 """Module docstring as the first line, as usual.""" |
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231 |
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232 __authors__ = "Olivier Delalleau, Frederic Bastien, David Warde-Farley" |
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233 __copyright__ = "(c) 2010, Universite de Montreal" |
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234 __license__ = "3-clause BSD License" |
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235 __contact__ = "Name Of Current Guardian of this file <email@address>" |
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236 |
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237 * Use ``//`` for integer division and ``/ float(...)`` if you want the |
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238 floating point operation (for readability and compatibility across all |
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239 versions of Python). |
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240 |
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241 .. code-block:: python |
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242 |
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243 # Good. |
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244 n_samples_per_split = n_samples // n_splits |
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245 mean_x = sum(x) / float(len(x)) |
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246 # Bad. |
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247 n_samples_per_split = n_samples / n_splits |
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248 mean_x = sum(x) / len(x) |
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249 |
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250 * Always raise an exception with ``raise MyException(args)`` where ``MyException`` |
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251 inherits from ``Exception``. This is required for compatibility across |
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252 all versions of Python. |
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253 |
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254 .. code-block:: python |
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255 |
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256 # Good. |
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257 raise NotImplementedError('The Pylearn team is too lazy.') |
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258 # Bad. |
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259 raise NotImplementedError, 'The Pylearn team is too lazy.' |
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260 raise 'The Pylearn team is too lazy to implement this.' |
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261 |
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262 * Use either ``try ... except`` or ``try ... finally``, but do not mix |
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263 ``except`` with ``finally`` (which is not supported in Python 2.4). |
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264 You can however embed one into the other to mimic the ``try ... except ... |
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265 finally`` behavior. |
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266 |
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267 .. code-block:: python |
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268 |
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269 # Good. |
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270 try: |
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271 try: |
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272 something_that_may_fail() |
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273 except SomeError: |
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274 do_something_if_it_failed() |
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275 finally: |
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276 always_do_this_regardless_of_what_happened() |
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277 # Bad. |
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278 try: |
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279 something_that_may_fail() |
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280 except SomeError: |
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281 do_something_if_it_failed() |
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282 finally: |
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283 always_do_this_regardless_of_what_happened() |
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284 |
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285 * No conditional expression (not supported in Python 2.4). These are |
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286 expressions of the form ``x = y if condition else z``. |
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287 |
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288 * Do not use the ``all`` and ``any`` builtin functions (they are not supported |
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289 in Python 2.4). Instead, import them from ``theano.gof.python25`` (or |
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290 use ``numpy.all`` / ``numpy.any`` for array data). |
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291 |
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292 * Do not use the ``hashlib`` module (not supported in Python 2.4). We will |
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293 probably provide a wrapper around it to be compatible with all Python |
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294 versions. |
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295 |
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296 * Use ``numpy.inf`` and ``numpy.nan`` rather than |
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297 ``float('inf')`` / ``float('nan')`` (should be slightly more efficient even |
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298 if efficiency is typically not an issue here, the main goal being code |
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299 consistency). Also, always use ``numpy.isinf`` / ``numpy.isnan`` to |
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300 test infinite / NaN values. This is important because ``numpy.nan != |
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301 float('nan')``. |
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302 |
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303 * Avoid backslashes whenever possible. They make it more |
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304 difficult to edit code, and they are ugly (as well as potentially |
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305 dangerous if there are trailing white spaces). |
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306 |
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307 .. code-block:: python |
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308 |
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309 # Good. |
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310 if (cond_1 and |
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311 cond_2 and |
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312 cond_3): |
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314 # Note that we added a blank line above to avoid confusion between |
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315 # conditions and the rest of the code (this would not have been |
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316 # needed if they were at significantly different indentation levels). |
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317 ... |
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318 # Bad. |
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319 if cond_1 and \ |
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320 cond_2 and \ |
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321 cond_3: |
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322 |
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323 ... |
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324 |
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325 * When indenting multi-line statements like lists or function arguments, |
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326 keep elements of the same level aligned with each other. |
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327 The position of the first |
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328 element (on the same line or a new line) should be chosen depending on |
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329 what is easiest to read (sometimes both can be ok). |
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330 |
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331 .. code-block:: python |
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332 |
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333 # Good. |
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334 for my_very_long_variable_name in [my_foo, my_bar, my_love, |
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335 my_everything]: |
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336 ... |
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337 for my_very_long_variable_name in [ |
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338 my_foo, my_bar, my_love, my_everything]: |
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339 ... |
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340 # Good iff the list needs to be frequently updated or is easier to |
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341 # understand when each element is on its own line. |
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342 for my_very_long_variable_name in [ |
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343 my_foo, |
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344 my_bar, |
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345 my_love, |
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346 my_everything, |
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347 ]: |
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348 ... |
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349 # Good as long as it does not require more than two lines. |
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350 for my_very_long_variable_name in [my_foo, |
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351 my_bar]: |
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352 ... |
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353 # Bad. |
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354 for my_very_long_variable_name in [my_foo, my_bar, my_love, |
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355 my_everything]: |
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356 ... |
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357 for my_very_long_variable_name in [my_foo, |
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358 my_bar, |
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359 my_love, |
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360 my_everything]: |
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361 ... |
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362 |
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363 * Use the ``key`` argument instead of ``cmp`` when sorting (for Python 3 |
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364 compatibility). |
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365 |
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366 .. code-block:: python |
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367 |
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368 # Good. |
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369 my_list.sort(key=abs) |
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370 # Bad. |
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371 my_list.sort(cmp=lambda x, y: cmp(abs(x), abs(y))) |
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372 |
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373 * Whenever you read / write binary files, specify it in the mode ('rb' for |
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374 reading, 'wb' for writing). This is important for cross-platform and |
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375 Python 3 compatibility (e.g. when pickling / unpickling objects). |
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376 |
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377 .. code-block:: python |
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378 |
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379 # Good. |
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380 cPickle.dump(obj, open('my_obj.pkl', 'wb', protocol=-1)) |
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381 # Bad. |
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382 cPickle.dump(obj, open('my_obj.pkl', 'w', protocol=-1)) |
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383 |
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384 * Avoid tuple parameter unpacking as it can lead to very ugly code when |
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385 converting to Python 3. |
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386 |
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387 .. code-block:: python |
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388 |
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389 # Good. |
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390 def f(x, y_z): |
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391 y, z = y_z |
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392 ... |
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393 # Bad. |
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394 def f(x, (y, z)): |
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395 ... |
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396 |
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397 * Only use ``cPickle``, not ``pickle`` (except for debugging purpose since |
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398 error messages from ``pickle`` are sometimes easier to understand). |
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399 |
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400 * A script's only top-level code should be something like: |
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401 |
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402 .. code-block:: python |
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403 |
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404 if __name__ == '__main__': |
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405 sys.exit(main()) |
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406 |
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407 |
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408 The ``logging`` Module vs. the ``warning`` Module |
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409 ================================================= |
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410 |
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411 The ``logging`` Module |
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412 ---------------------- |
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413 |
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414 A central logging facility for Python capable of logging messages of various |
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415 categories/urgency and choosing with some granularity which messages are |
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416 displayed/suppressed, as well as where they are displayed or written. This |
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417 includes an ``INFO`` level for innocuous status information, a ``WARNING`` level |
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418 for unexpected state that is still recoverable, ``DEBUG`` for detailed |
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419 information which is only really of interest when things are going wrong, etc. |
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420 |
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421 In addition to the `library documentation`_, see this helpful tutorial, |
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422 `Python Logging 101`_. |
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423 |
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424 .. _library documentation: http://docs.python.org/library/logging.html |
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425 .. _Python Logging 101: http://plumberjack.blogspot.com/2009/09/python-logging-101.html |
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426 |
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427 The ``warning`` Module |
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428 ---------------------- |
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429 |
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430 The ``warning`` module in the standard library and its main interface, the |
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431 ``warn()`` function, allows the programmer to issue warnings in situations where |
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432 they wish to alert the user to some condition, but the situation is not |
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433 urgent enough to throw an exception. By default, a warning issued at a given |
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434 line of the code will only be displayed the first time that line is executed. |
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435 By default, warnings are written to ``sys.stderr`` but the ``warning`` module |
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436 contains flexible facilities for altering the defaults, redirecting, etc. |
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437 |
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438 Which? When? |
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439 ------------ |
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440 |
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441 It is our feeling that the ``logging`` module's ``WARNING`` level be used to log |
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442 warnings more meant for *internal*, *developer* consumption, to log situations |
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443 where something unexpected happened that may be indicative of a problem but |
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444 is several layers of abstraction below what a user of the library would |
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445 care about. |
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446 |
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447 By contrast, the warning module should be used for warnings intended for user |
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448 consumption, e.g. alerting them that their version of Pylearn is older than |
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449 this plugin requires, so things may not work as expected, or that a given |
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450 function/class/method is slated for deprecation in a coming release (early |
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451 in the library's lifetime, ``DeprecationWarning`` will likely be the most common |
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452 case). The warning message issued through this facility should avoid |
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453 referring to Pylearn internals. |
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454 |
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455 Code Sample |
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456 =========== |
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457 |
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458 The following code sample illustrates some of the coding guidelines one should |
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459 follow in Pylearn. This is still a work-in-progress. |
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460 |
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461 .. code-block:: python |
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462 |
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463 #! /usr/env/bin python |
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464 |
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465 """Sample code. There may still be mistakes / missing elements.""" |
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466 |
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467 __authors__ = "Olivier Delalleau" |
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468 __copyright__ = "(c) 2010, Universite de Montreal" |
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469 __license__ = "3-clause BSD License" |
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470 __contact__ = "Olivier Delalleau <delallea@iro>" |
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471 |
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472 # Standard library imports are on a single line. |
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473 import os, sys, time |
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474 |
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475 # Third-party imports come after standard library imports, and there is |
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476 # only one import per line. Imports are sorted lexicographically. |
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477 import numpy |
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478 import scipy |
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479 import theano |
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480 # Put 'from' imports below. |
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481 from numpy import argmax |
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482 from theano import tensor |
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483 |
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484 # Application-specific imports come last. |
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485 from pylearn import dataset |
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486 from pylearn.optimization import minimize |
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487 |
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488 def print_files_in(directory): |
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489 """Print the first line of each file in given directory.""" |
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490 # TODO To be continued... |
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491 |
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492 def main(): |
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493 if len(sys.argv) != 2: |
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494 # Note: conventions on how to display script documentation and |
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495 # parse arguments are still to-be-determined. |
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496 print("""\ |
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497 Usage: %s <directory> |
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498 Print first line of each file in given directory (in alphabetic order).""" |
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499 % os.path.basename(sys.argv[0])) |
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500 return 1 |
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501 print_files_in(sys.argv[1]) |
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502 return 0 |
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503 |
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504 # Top-level executable code should be minimal. |
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505 if __name__ == '__main__': |
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506 sys.exit(main()) |
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507 |
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508 |
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509 Automatic Code Verification |
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510 =========================== |
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511 |
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512 Tools will be available to make it easier to automatically ensure that code |
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513 committed to Pylearn complies to above specifications. This work is not |
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514 finalized yet, but David started a `Wiki page`_ with helpful configuration |
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515 tips for Vim. |
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516 |
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517 .. _Wiki page: http://www.iro.umontreal.ca/~lisa/twiki/bin/view.cgi/Divers/VimPythonRecommendations |
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518 |
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519 TODO |
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520 ==== |
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521 |
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522 Things still missing from this document, being discussed in coding_style.txt: |
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523 - Proper style for C code and Mercurial commits |
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524 - Enforcing 100% test coverage of the code base |
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525 - Providing ways to add type checking for function arguments |
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526 - Conventions for script usage documentation and argument parsing |
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527 - Conventions for class / method / function documentation |
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528 - Guidelines for serialization-friendly code (hint: nested and lambda |
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529 functions, as well as instance methods, cannot be serialized, and |
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530 apparently there are some issues with decorators -- to be investigated). |
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531 |
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532 |