Mercurial > ift6266

comparison utils/tables_series/test_series.py @ 210:dc0d77c8a878

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Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
author savardf
date Tue, 09 Mar 2010 10:15:19 -0500
parents acb942530923
children
comparison
equal deleted inserted replaced
209:d982dfa583df 210:dc0d77c8a878
1 import tempfile 1 import tempfile
2 import numpy 2 import numpy
3 import numpy.random 3 import numpy.random
4
5 from jobman import DD
6
4 from tables import * 7 from tables import *
5 8
6 from series import * 9 from series import *
7 10
8 11
107 assert compare_lists(table.cols.mean[:], [0.21666667, 0.23333333, -0.29333332, 0.69], floats=True) 110 assert compare_lists(table.cols.mean[:], [0.21666667, 0.23333333, -0.29333332, 0.69], floats=True)
108 assert compare_lists(table.cols.min[:], [0.15000001, -0.18000001, -0.68000001, 0.02], floats=True) 111 assert compare_lists(table.cols.min[:], [0.15000001, -0.18000001, -0.68000001, 0.02], floats=True)
109 assert compare_lists(table.cols.max[:], [0.30, 0.58, 0.18, 1.9], floats=True) 112 assert compare_lists(table.cols.max[:], [0.30, 0.58, 0.18, 1.9], floats=True)
110 assert compare_lists(table.cols.std[:], [0.06236095, 0.31382939, 0.35640177, 0.85724366], floats=True) 113 assert compare_lists(table.cols.std[:], [0.06236095, 0.31382939, 0.35640177, 0.85724366], floats=True)
111 114
112 def test_ParamsStatisticsWrapper_commoncase(h5f=None): 115 def test_SharedParamsStatisticsWrapper_commoncase(h5f=None):
113 import numpy.random 116 import numpy.random
114 117
115 if not h5f: 118 if not h5f:
116 h5f_path = tempfile.NamedTemporaryFile().name 119 h5f_path = tempfile.NamedTemporaryFile().name
117 h5f = openFile(h5f_path, "w") 120 h5f = openFile(h5f_path, "w")
118 121
119 stats = ParamsStatisticsWrapper(new_group_name="params", base_group="/", 122 stats = SharedParamsStatisticsWrapper(new_group_name="params", base_group="/",
120 arrays_names=('b1','b2','b3'), hdf5_file=h5f, 123 arrays_names=('b1','b2','b3'), hdf5_file=h5f,
121 index_names=('epoch','minibatch')) 124 index_names=('epoch','minibatch'))
122 125
123 b1 = numpy.random.rand(5) 126 b1 = DD({'value':numpy.random.rand(5)})
124 b2 = numpy.random.rand(5) 127 b2 = DD({'value':numpy.random.rand(5)})
125 b3 = numpy.random.rand(5) 128 b3 = DD({'value':numpy.random.rand(5)})
126 stats.append((1,1), [b1,b2,b3]) 129 stats.append((1,1), [b1,b2,b3])
127 130
128 h5f.close() 131 h5f.close()
129 132
130 h5f = openFile(h5f_path, "r") 133 h5f = openFile(h5f_path, "r")
131 134
132 b1_table = h5f.getNode('/params', 'b1') 135 b1_table = h5f.getNode('/params', 'b1')
133 b3_table = h5f.getNode('/params', 'b3') 136 b3_table = h5f.getNode('/params', 'b3')
134 137
135 assert b1_table.cols.mean[0] - numpy.mean(b1) < 1e-3 138 assert b1_table.cols.mean[0] - numpy.mean(b1.value) < 1e-3
136 assert b3_table.cols.mean[0] - numpy.mean(b3) < 1e-3 139 assert b3_table.cols.mean[0] - numpy.mean(b3.value) < 1e-3
137 assert b1_table.cols.min[0] - numpy.min(b1) < 1e-3 140 assert b1_table.cols.min[0] - numpy.min(b1.value) < 1e-3
138 assert b3_table.cols.min[0] - numpy.min(b3) < 1e-3 141 assert b3_table.cols.min[0] - numpy.min(b3.value) < 1e-3
139 142
140 def test_get_desc(): 143 def test_get_desc():
141 h5f_path = tempfile.NamedTemporaryFile().name 144 h5f_path = tempfile.NamedTemporaryFile().name
142 h5f = openFile(h5f_path, "w") 145 h5f = openFile(h5f_path, "w")
143 146
164 import tempfile 167 import tempfile
165 test_get_desc() 168 test_get_desc()
166 test_ErrorSeries_common_case() 169 test_ErrorSeries_common_case()
167 test_BasicStatisticsSeries_common_case() 170 test_BasicStatisticsSeries_common_case()
168 test_AccumulatorSeriesWrapper_common_case() 171 test_AccumulatorSeriesWrapper_common_case()
169 test_ParamsStatisticsWrapper_commoncase() 172 test_SharedParamsStatisticsWrapper_commoncase()
170 173