ift6266: datasets/ftfile.py annotate

annotate datasets/ftfile.py @ 616:b0cdd200b2bd

added aistats_review_response.txt

author	Yoshua Bengio <bengioy@iro.umontreal.ca>
date	Sun, 09 Jan 2011 12:13:45 -0500
parents	337253b82409
children

rev	line source
615 337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	1 from itertools import izip
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	2 import os
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	3
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	4 import numpy
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	5 from pylearn.io.filetensor import _read_header, _prod
615 337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	6
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	7 from dataset import DataSet
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	8 from dsetiter import DataIterator
615 337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	9
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	10
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	11 class FTFile(object):
180 76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	12 def __init__(self, fname, scale=1, dtype=None):
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	13 r"""
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	14 Tests:
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	15 >>> f = FTFile('/data/lisa/data/nist/by_class/digits/digits_test_labels.ft')
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	16 """
615 337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	17 if os.path.exists(fname):
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	18 self.file = open(fname, 'rb')
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	19 self.magic_t, self.elsize, _, self.dim, _ = _read_header(self.file, False)
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	20 self.gz=False
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	21 else:
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	22 import gzip
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	23 self.file = gzip.open(fname+'.gz','rb')
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	24 self.magic_t, self.elsize, _, self.dim, _ = _read_header(self.file, False, True)
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	25 self.gz=True
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	26
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	27 self.size = self.dim[0]
180 76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	28 self.scale = scale
76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	29 self.dtype = dtype
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	30
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	31 def skip(self, num):
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	32 r"""
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	33 Skips `num` items in the file.
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	34
173 954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	35 If `num` is negative, skips size-num.
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	36
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	37 Tests:
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	38 >>> f = FTFile('/data/lisa/data/nist/by_class/digits/digits_test_labels.ft')
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	39 >>> f.size
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	40 58646
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	41 >>> f.elsize
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	42 4
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	43 >>> f.file.tell()
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	44 20
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	45 >>> f.skip(1000)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	46 >>> f.file.tell()
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	47 4020
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	48 >>> f.size
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	49 57646
173 954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	50 >>> f = FTFile('/data/lisa/data/nist/by_class/digits/digits_test_labels.ft')
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	51 >>> f.size
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	52 58646
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	53 >>> f.file.tell()
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	54 20
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	55 >>> f.skip(-1000)
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	56 >>> f.file.tell()
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	57 230604
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	58 >>> f.size
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	59 1000
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	60 """
173 954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	61 if num < 0:
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	62 num += self.size
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	63 if num < 0:
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	64 raise ValueError('Skipping past the start of the file')
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	65 if num >= self.size:
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	66 self.size = 0
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	67 else:
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	68 self.size -= num
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	69 f_start = self.file.tell()
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	70 self.file.seek(f_start + (self.elsize * _prod(self.dim[1:]) * num))
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	71
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	72 def read(self, num):
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	73 r"""
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	74 Reads `num` elements from the file and return the result as a
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	75 numpy matrix. Last read is truncated.
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	76
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	77 Tests:
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	78 >>> f = FTFile('/data/lisa/data/nist/by_class/digits/digits_test_labels.ft')
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	79 >>> f.read(1)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	80 array([6], dtype=int32)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	81 >>> f.read(10)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	82 array([7, 4, 7, 5, 6, 4, 8, 0, 9, 6], dtype=int32)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	83 >>> f.skip(58630)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	84 >>> f.read(10)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	85 array([9, 2, 4, 2, 8], dtype=int32)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	86 >>> f.read(10)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	87 array([], dtype=int32)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	88 >>> f = FTFile('/data/lisa/data/nist/by_class/digits/digits_test_data.ft')
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	89 >>> f.read(1)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	90 array([[0, 0, 0, ..., 0, 0, 0]], dtype=uint8)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	91 """
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	92 if num > self.size:
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	93 num = self.size
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	94 self.dim[0] = num
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	95 self.size -= num
615 337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	96 if self.gz:
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	97 d = self.file.read(_prod(self.dim)*self.elsize)
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	98 res = numpy.fromstring(d, dtype=self.magic_t, count=_prod(self.dim)).reshape(self.dim)
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	99 else:
337253b82409 repair the class/fct that allow to read pnist07 and others by allowing them to read gziped file. Frederic Bastien <nouiz@nouiz.org> parents: 614 diff changeset	100 res = numpy.fromfile(self.file, dtype=self.magic_t, count=_prod(self.dim)).reshape(self.dim)
180 76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	101 if self.dtype is not None:
76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	102 res = res.astype(self.dtype)
76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	103 if self.scale != 1:
76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	104 res /= self.scale
76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	105 return res
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	106
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	107 class FTSource(object):
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	108 def __init__(self, file, skip=0, size=None, maxsize=None,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	109 dtype=None, scale=1):
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	110 r"""
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	111 Create a data source from a possible subset of a .ft file.
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	112
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	113 Parameters:
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	114 `file` -- (string) the filename
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	115 `skip` -- (int, optional) amount of examples to skip from
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	116 the start of the file. If negative, skips
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	117 filesize - skip.
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	118 `size` -- (int, optional) truncates number of examples
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	119 read (after skipping). If negative truncates to
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	120 filesize - size (also after skipping).
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	121 `maxsize` -- (int, optional) the maximum size of the file
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	122 `dtype` -- (dtype, optional) convert the data to this
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	123 dtype after reading.
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	124 `scale` -- (number, optional) scale (that is divide) the
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	125 data by this number (after dtype conversion, if
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	126 any).
180 76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	127
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	128 Tests:
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	129 >>> s = FTSource('/data/lisa/data/nist/by_class/digits/digits_test_data.ft')
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	130 >>> s = FTSource('/data/lisa/data/nist/by_class/digits/digits_test_data.ft', size=1000)
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	131 >>> s = FTSource('/data/lisa/data/nist/by_class/digits/digits_test_data.ft', skip=10)
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	132 >>> s = FTSource('/data/lisa/data/nist/by_class/digits/digits_test_data.ft', skip=100, size=120)
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	133 """
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	134 self.file = file
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	135 self.skip = skip
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	136 self.size = size
180 76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	137 self.dtype = dtype
76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	138 self.scale = scale
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	139 self.maxsize = maxsize
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	140
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	141 def open(self):
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	142 r"""
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	143 Returns an FTFile that corresponds to this dataset.
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	144
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	145 Tests:
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	146 >>> s = FTSource('/data/lisa/data/nist/by_class/digits/digits_test_data.ft')
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	147 >>> f = s.open()
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	148 >>> s = FTSource('/data/lisa/data/nist/by_class/digits/digits_test_data.ft', size=1)
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	149 >>> len(s.open().read(2))
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	150 1
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	151 >>> s = FTSource('/data/lisa/data/nist/by_class/digits/digits_test_data.ft', skip=57646)
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	152 >>> s.open().size
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	153 1000
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	154 >>> s = FTSource('/data/lisa/data/nist/by_class/digits/digits_test_data.ft', skip=57646, size=1)
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	155 >>> s.open().size
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	156 1
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	157 >>> s = FTSource('/data/lisa/data/nist/by_class/digits/digits_test_data.ft', size=-10)
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	158 >>> s.open().size
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	159 58636
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	160 """
180 76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	161 f = FTFile(self.file, scale=self.scale, dtype=self.dtype)
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	162 if self.skip != 0:
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	163 f.skip(self.skip)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	164 if self.size is not None and self.size < f.size:
173 954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	165 if self.size < 0:
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	166 f.size += self.size
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	167 if f.size < 0:
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	168 f.size = 0
173 954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	169 else:
954185d6002a Take the validation set at the end of the training set files rather than at the beginning. Arnaud Bergeron <abergeron@gmail.com> parents: 163 diff changeset	170 f.size = self.size
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	171 if self.maxsize is not None and f.size > self.maxsize:
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	172 f.size = self.maxsize
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	173 return f
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	174
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	175 class FTData(object):
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	176 r"""
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	177 This is a list of FTSources.
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	178 """
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	179 def __init__(self, datafiles, labelfiles, skip=0, size=None, maxsize=None,
180 76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	180 inscale=1, indtype=None, outscale=1, outdtype=None):
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	181 if maxsize is not None:
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	182 maxsize /= len(datafiles)
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	183 self.inputs = [FTSource(f, skip, size, maxsize, scale=inscale, dtype=indtype)
180 76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	184 for f in datafiles]
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	185 self.outputs = [FTSource(f, skip, size, maxsize, scale=outscale, dtype=outdtype)
180 76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	186 for f in labelfiles]
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	187
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	188 def open_inputs(self):
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	189 return [f.open() for f in self.inputs]
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	190
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	191 def open_outputs(self):
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	192 return [f.open() for f in self.outputs]
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	193
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	194
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	195 class FTDataSet(DataSet):
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	196 def __init__(self, train_data, train_lbl, test_data, test_lbl,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	197 valid_data=None, valid_lbl=None, indtype=None, outdtype=None,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	198 inscale=1, outscale=1, maxsize=None):
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	199 r"""
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	200 Defines a DataSet from a bunch of files.
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	201
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	202 Parameters:
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	203 `train_data` -- list of train data files
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	204 `train_label` -- list of train label files (same length as `train_data`)
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	205 `test_data`, `test_labels` -- same thing as train, but for
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	206 test. The number of files
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	207 can differ from train.
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	208 `valid_data`, `valid_labels` -- same thing again for validation.
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	209 (optional)
180 76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	210 `indtype`, `outdtype`, -- see FTSource.__init__()
76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	211 `inscale`, `outscale` (optional)
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	212 `maxsize` -- maximum size of the set returned
180 76bc047df5ee Add dtype conversion and rescaling to the read path. Arnaud Bergeron <abergeron@gmail.com> parents: 178 diff changeset	213
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	214
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	215 If `valid_data` and `valid_labels` are not supplied then a sample
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	216 approximately equal in size to the test set is taken from the train
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	217 set.
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	218 """
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	219 if valid_data is None:
271 a92ec9939e4f fixed a problem with maxsize when not provided Yoshua Bengio <bengioy@iro.umontreal.ca> parents: 257 diff changeset	220 total_valid_size = sum(FTFile(td).size for td in test_data)
a92ec9939e4f fixed a problem with maxsize when not provided Yoshua Bengio <bengioy@iro.umontreal.ca> parents: 257 diff changeset	221 if maxsize is not None:
a92ec9939e4f fixed a problem with maxsize when not provided Yoshua Bengio <bengioy@iro.umontreal.ca> parents: 257 diff changeset	222 total_valid_size = min(total_valid_size, maxsize)
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	223 valid_size = total_valid_size/len(train_data)
214 1faae5079522 The in/outscale parameters were not passed to FTData Dumitru Erhan <dumitru.erhan@gmail.com> parents: 181 diff changeset	224 self._train = FTData(train_data, train_lbl, size=-valid_size,
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	225 inscale=inscale, outscale=outscale,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	226 indtype=indtype, outdtype=outdtype,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	227 maxsize=maxsize)
214 1faae5079522 The in/outscale parameters were not passed to FTData Dumitru Erhan <dumitru.erhan@gmail.com> parents: 181 diff changeset	228 self._valid = FTData(train_data, train_lbl, skip=-valid_size,
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	229 inscale=inscale, outscale=outscale,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	230 indtype=indtype, outdtype=outdtype,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	231 maxsize=maxsize)
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	232 else:
257 966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	233 self._train = FTData(train_data, train_lbl, maxsize=maxsize,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	234 inscale=inscale, outscale=outscale,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	235 indtype=indtype, outdtype=outdtype)
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	236 self._valid = FTData(valid_data, valid_lbl, maxsize=maxsize,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	237 inscale=inscale, outscale=outscale,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	238 indtype=indtype, outdtype=outdtype)
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	239 self._test = FTData(test_data, test_lbl, maxsize=maxsize,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	240 inscale=inscale, outscale=outscale,
966272e7f14b Make the datasets lazy-loading and add a maxsize parameter. Arnaud Bergeron <abergeron@gmail.com> parents: 214 diff changeset	241 indtype=indtype, outdtype=outdtype)
163 4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	242
4b28d7382dbf Add inital implementation of datasets. Arnaud Bergeron <abergeron@gmail.com> parents: diff changeset	243 def _return_it(self, batchsize, bufsize, ftdata):
177 be714ac9bcbd Use izip(), not zip() to return a lazy iterator. (datasets) Arnaud Bergeron <abergeron@gmail.com> parents: 173 diff changeset	244 return izip(DataIterator(ftdata.open_inputs(), batchsize, bufsize),
181 f0f47b045cbf Remove a stray cast in the FTDataSet code and export the ocr dataset. Arnaud Bergeron <abergeron@gmail.com> parents: 180 diff changeset	245 DataIterator(ftdata.open_outputs(), batchsize, bufsize))

Mercurial > ift6266

annotate datasets/ftfile.py @ 616:b0cdd200b2bd