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annotate utils/seriestables/test_series.py @ 213:a96fa4de06d2

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Renommé mon module de séries
author fsavard
date Wed, 10 Mar 2010 16:52:22 -0500
parents utils/tables_series/test_series.py@dc0d77c8a878
children 4c137f16b013
rev   line source
208
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
1 import tempfile
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
2 import numpy
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
3 import numpy.random
210
dc0d77c8a878 Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
savardf
parents: 208
diff changeset
4
dc0d77c8a878 Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
savardf
parents: 208
diff changeset
5 from jobman import DD
dc0d77c8a878 Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
savardf
parents: 208
diff changeset
6
208
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
7 from tables import *
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
8
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
9 from series import *
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
10
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
11
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
12 def compare_floats(f1,f2):
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
13 if f1-f2 < 1e-3:
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
14 return True
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
15 return False
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
16
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
17 def compare_lists(it1, it2, floats=False):
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
18 if len(it1) != len(it2):
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
19 return False
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
20
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
21 for el1, el2 in zip(it1, it2):
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
22 if floats:
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
23 if not compare_floats(el1,el2):
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
24 return False
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
25 elif el1 != el2:
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
26 return False
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
27
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
28 return True
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
29
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
30 def test_ErrorSeries_common_case(h5f=None):
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
31 if not h5f:
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
32 h5f_path = tempfile.NamedTemporaryFile().name
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
33 h5f = openFile(h5f_path, "w")
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
34
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
35 validation_error = ErrorSeries(error_name="validation_error", table_name="validation_error",
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
36 hdf5_file=h5f, index_names=('epoch','minibatch'),
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
37 title="Validation error indexed by epoch and minibatch")
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
38
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
39 # (1,1), (1,2) etc. are (epoch, minibatch) index
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
40 validation_error.append((1,1), 32.0)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
41 validation_error.append((1,2), 30.0)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
42 validation_error.append((2,1), 28.0)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
43 validation_error.append((2,2), 26.0)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
44
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
45 h5f.close()
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
46
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
47 h5f = openFile(h5f_path, "r")
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
48
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
49 table = h5f.getNode('/', 'validation_error')
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
50
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
51 assert compare_lists(table.cols.epoch[:], [1,1,2,2])
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
52 assert compare_lists(table.cols.minibatch[:], [1,2,1,2])
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
53 assert compare_lists(table.cols.validation_error[:], [32.0, 30.0, 28.0, 26.0])
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
54
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
55 def test_AccumulatorSeriesWrapper_common_case(h5f=None):
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
56 if not h5f:
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
57 h5f_path = tempfile.NamedTemporaryFile().name
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
58 h5f = openFile(h5f_path, "w")
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
59
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
60 validation_error = ErrorSeries(error_name="accumulated_validation_error",
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
61 table_name="accumulated_validation_error",
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
62 hdf5_file=h5f,
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
63 index_names=('epoch','minibatch'),
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
64 title="Validation error, summed every 3 minibatches, indexed by epoch and minibatch")
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
65
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
66 accumulator = AccumulatorSeriesWrapper(base_series=validation_error,
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
67 reduce_every=3, reduce_function=numpy.sum)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
68
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
69 # (1,1), (1,2) etc. are (epoch, minibatch) index
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
70 accumulator.append((1,1), 32.0)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
71 accumulator.append((1,2), 30.0)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
72 accumulator.append((2,1), 28.0)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
73 accumulator.append((2,2), 26.0)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
74 accumulator.append((3,1), 24.0)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
75 accumulator.append((3,2), 22.0)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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76
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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77 h5f.close()
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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78
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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79 h5f = openFile(h5f_path, "r")
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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diff changeset
80
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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diff changeset
81 table = h5f.getNode('/', 'accumulated_validation_error')
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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82
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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diff changeset
83 assert compare_lists(table.cols.epoch[:], [2,3])
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
84 assert compare_lists(table.cols.minibatch[:], [1,2])
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
85 assert compare_lists(table.cols.accumulated_validation_error[:], [90.0,72.0], floats=True)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
86
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
87 def test_BasicStatisticsSeries_common_case(h5f=None):
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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diff changeset
88 if not h5f:
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
89 h5f_path = tempfile.NamedTemporaryFile().name
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
90 h5f = openFile(h5f_path, "w")
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
91
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
92 stats_series = BasicStatisticsSeries(table_name="b_vector_statistics",
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
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diff changeset
93 hdf5_file=h5f, index_names=('epoch','minibatch'),
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
fsavard
parents:
diff changeset
94 title="Basic statistics for b vector indexed by epoch and minibatch")
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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95
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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96 # (1,1), (1,2) etc. are (epoch, minibatch) index
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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97 stats_series.append((1,1), [0.15, 0.20, 0.30])
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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98 stats_series.append((1,2), [-0.18, 0.30, 0.58])
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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99 stats_series.append((2,1), [0.18, -0.38, -0.68])
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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100 stats_series.append((2,2), [0.15, 0.02, 1.9])
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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101
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102 h5f.close()
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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103
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104 h5f = openFile(h5f_path, "r")
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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105
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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106 table = h5f.getNode('/', 'b_vector_statistics')
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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107
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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108 assert compare_lists(table.cols.epoch[:], [1,1,2,2])
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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109 assert compare_lists(table.cols.minibatch[:], [1,2,1,2])
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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110 assert compare_lists(table.cols.mean[:], [0.21666667, 0.23333333, -0.29333332, 0.69], floats=True)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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111 assert compare_lists(table.cols.min[:], [0.15000001, -0.18000001, -0.68000001, 0.02], floats=True)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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112 assert compare_lists(table.cols.max[:], [0.30, 0.58, 0.18, 1.9], floats=True)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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113 assert compare_lists(table.cols.std[:], [0.06236095, 0.31382939, 0.35640177, 0.85724366], floats=True)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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114
210
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115 def test_SharedParamsStatisticsWrapper_commoncase(h5f=None):
208
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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116 import numpy.random
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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117
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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118 if not h5f:
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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119 h5f_path = tempfile.NamedTemporaryFile().name
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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120 h5f = openFile(h5f_path, "w")
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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121
210
dc0d77c8a878 Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
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122 stats = SharedParamsStatisticsWrapper(new_group_name="params", base_group="/",
208
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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123 arrays_names=('b1','b2','b3'), hdf5_file=h5f,
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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124 index_names=('epoch','minibatch'))
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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125
210
dc0d77c8a878 Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
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126 b1 = DD({'value':numpy.random.rand(5)})
dc0d77c8a878 Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
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127 b2 = DD({'value':numpy.random.rand(5)})
dc0d77c8a878 Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
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128 b3 = DD({'value':numpy.random.rand(5)})
208
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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129 stats.append((1,1), [b1,b2,b3])
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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130
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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131 h5f.close()
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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132
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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133 h5f = openFile(h5f_path, "r")
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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134
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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135 b1_table = h5f.getNode('/params', 'b1')
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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136 b3_table = h5f.getNode('/params', 'b3')
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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137
210
dc0d77c8a878 Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
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138 assert b1_table.cols.mean[0] - numpy.mean(b1.value) < 1e-3
dc0d77c8a878 Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
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139 assert b3_table.cols.mean[0] - numpy.mean(b3.value) < 1e-3
dc0d77c8a878 Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
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140 assert b1_table.cols.min[0] - numpy.min(b1.value) < 1e-3
dc0d77c8a878 Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
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141 assert b3_table.cols.min[0] - numpy.min(b3.value) < 1e-3
208
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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142
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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143 def test_get_desc():
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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144 h5f_path = tempfile.NamedTemporaryFile().name
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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145 h5f = openFile(h5f_path, "w")
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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146
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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147 desc = get_description_with_n_ints_n_floats(("col1","col2"), ("col3","col4"))
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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148
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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149 mytable = h5f.createTable('/', 'mytable', desc)
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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150
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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151 # just make sure the columns are there... otherwise this will throw an exception
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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152 mytable.cols.col1
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153 mytable.cols.col2
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154 mytable.cols.col3
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155 mytable.cols.col4
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156
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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157 try:
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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158 # this should fail... LocalDescription must be local to get_desc_etc
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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159 test = LocalDescription
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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160 assert False
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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161 except:
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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162 assert True
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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163
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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164 assert True
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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165
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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166 if __name__ == '__main__':
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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167 import tempfile
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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168 test_get_desc()
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169 test_ErrorSeries_common_case()
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170 test_BasicStatisticsSeries_common_case()
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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171 test_AccumulatorSeriesWrapper_common_case()
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dc0d77c8a878 Commented table_series code, changed ParamsStatisticsArray to take shared params instead, create DummySeries to use when we don't want to save a named series
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172 test_SharedParamsStatisticsWrapper_commoncase()
208
acb942530923 Completely rewrote my series module, now based on HDF5 and PyTables (in a separate directory called 'tables_series' for retrocompatibility of running code). Minor (inconsequential) changes to stacked_dae.
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173