annotate code_tutoriel/logistic_sgd.py @ 642:8b1a0b9fecff

made publication list shorter.
author Frederic Bastien <nouiz@nouiz.org>
date Mon, 21 Mar 2011 11:29:09 -0400
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1 """
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2 This tutorial introduces logistic regression using Theano and stochastic
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3 gradient descent.
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4
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5 Logistic regression is a probabilistic, linear classifier. It is parametrized
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6 by a weight matrix :math:`W` and a bias vector :math:`b`. Classification is
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7 done by projecting data points onto a set of hyperplanes, the distance to
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8 which is used to determine a class membership probability.
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9
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10 Mathematically, this can be written as:
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11
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12 .. math::
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13 P(Y=i|x, W,b) &= softmax_i(W x + b) \\
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14 &= \frac {e^{W_i x + b_i}} {\sum_j e^{W_j x + b_j}}
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17 The output of the model or prediction is then done by taking the argmax of
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18 the vector whose i'th element is P(Y=i|x).
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20 .. math::
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22 y_{pred} = argmax_i P(Y=i|x,W,b)
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25 This tutorial presents a stochastic gradient descent optimization method
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26 suitable for large datasets, and a conjugate gradient optimization method
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27 that is suitable for smaller datasets.
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30 References:
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31
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32 - textbooks: "Pattern Recognition and Machine Learning" -
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33 Christopher M. Bishop, section 4.3.2
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34
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35 """
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36 __docformat__ = 'restructedtext en'
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37
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38 import numpy, time, cPickle, gzip
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39
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40 import theano
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41 import theano.tensor as T
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43
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44 class LogisticRegression(object):
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45 """Multi-class Logistic Regression Class
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46
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47 The logistic regression is fully described by a weight matrix :math:`W`
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48 and bias vector :math:`b`. Classification is done by projecting data
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49 points onto a set of hyperplanes, the distance to which is used to
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50 determine a class membership probability.
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51 """
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52
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56 def __init__(self, input, n_in, n_out):
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57 """ Initialize the parameters of the logistic regression
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58
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59 :type input: theano.tensor.TensorType
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60 :param input: symbolic variable that describes the input of the
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61 architecture (one minibatch)
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62
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63 :type n_in: int
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64 :param n_in: number of input units, the dimension of the space in
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65 which the datapoints lie
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67 :type n_out: int
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68 :param n_out: number of output units, the dimension of the space in
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69 which the labels lie
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71 """
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72
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73 # initialize with 0 the weights W as a matrix of shape (n_in, n_out)
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74 self.W = theano.shared(value=numpy.zeros((n_in,n_out), dtype = theano.config.floatX),
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75 name='W')
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76 # initialize the baises b as a vector of n_out 0s
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77 self.b = theano.shared(value=numpy.zeros((n_out,), dtype = theano.config.floatX),
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78 name='b')
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81 # compute vector of class-membership probabilities in symbolic form
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82 self.p_y_given_x = T.nnet.softmax(T.dot(input, self.W)+self.b)
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83
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84 # compute prediction as class whose probability is maximal in
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85 # symbolic form
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86 self.y_pred=T.argmax(self.p_y_given_x, axis=1)
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87
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88 # parameters of the model
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89 self.params = [self.W, self.b]
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90
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94
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95 def negative_log_likelihood(self, y):
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96 """Return the mean of the negative log-likelihood of the prediction
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97 of this model under a given target distribution.
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98
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99 .. math::
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100
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101 \frac{1}{|\mathcal{D}|} \mathcal{L} (\theta=\{W,b\}, \mathcal{D}) =
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102 \frac{1}{|\mathcal{D}|} \sum_{i=0}^{|\mathcal{D}|} \log(P(Y=y^{(i)}|x^{(i)}, W,b)) \\
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103 \ell (\theta=\{W,b\}, \mathcal{D})
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104
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105 :type y: theano.tensor.TensorType
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106 :param y: corresponds to a vector that gives for each example the
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107 correct label
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108
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109 Note: we use the mean instead of the sum so that
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110 the learning rate is less dependent on the batch size
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111 """
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112 # y.shape[0] is (symbolically) the number of rows in y, i.e., number of examples (call it n) in the minibatch
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113 # T.arange(y.shape[0]) is a symbolic vector which will contain [0,1,2,... n-1]
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114 # T.log(self.p_y_given_x) is a matrix of Log-Probabilities (call it LP) with one row per example and one column per class
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115 # LP[T.arange(y.shape[0]),y] is a vector v containing [LP[0,y[0]], LP[1,y[1]], LP[2,y[2]], ..., LP[n-1,y[n-1]]]
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116 # and T.mean(LP[T.arange(y.shape[0]),y]) is the mean (across minibatch examples) of the elements in v,
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117 # i.e., the mean log-likelihood across the minibatch.
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118 return -T.mean(T.log(self.p_y_given_x)[T.arange(y.shape[0]),y])
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119
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120
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121 def errors(self, y):
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122 """Return a float representing the number of errors in the minibatch
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123 over the total number of examples of the minibatch ; zero one
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124 loss over the size of the minibatch
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125
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126 :type y: theano.tensor.TensorType
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127 :param y: corresponds to a vector that gives for each example the
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128 correct label
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129 """
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130
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131 # check if y has same dimension of y_pred
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132 if y.ndim != self.y_pred.ndim:
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133 raise TypeError('y should have the same shape as self.y_pred',
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134 ('y', target.type, 'y_pred', self.y_pred.type))
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135 # check if y is of the correct datatype
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136 if y.dtype.startswith('int'):
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137 # the T.neq operator returns a vector of 0s and 1s, where 1
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138 # represents a mistake in prediction
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139 return T.mean(T.neq(self.y_pred, y))
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140 else:
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141 raise NotImplementedError()
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142
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143
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144 def load_data(dataset):
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145 ''' Loads the dataset
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146
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147 :type dataset: string
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148 :param dataset: the path to the dataset (here MNIST)
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149 '''
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150
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151 #############
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152 # LOAD DATA #
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153 #############
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154 print '... loading data'
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155
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156 # Load the dataset
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157 f = gzip.open(dataset,'rb')
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158 train_set, valid_set, test_set = cPickle.load(f)
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159 f.close()
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160
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161
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162 def shared_dataset(data_xy):
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163 """ Function that loads the dataset into shared variables
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164
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165 The reason we store our dataset in shared variables is to allow
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166 Theano to copy it into the GPU memory (when code is run on GPU).
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167 Since copying data into the GPU is slow, copying a minibatch everytime
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168 is needed (the default behaviour if the data is not in a shared
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169 variable) would lead to a large decrease in performance.
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170 """
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171 data_x, data_y = data_xy
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172 shared_x = theano.shared(numpy.asarray(data_x, dtype=theano.config.floatX))
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173 shared_y = theano.shared(numpy.asarray(data_y, dtype=theano.config.floatX))
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174 # When storing data on the GPU it has to be stored as floats
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175 # therefore we will store the labels as ``floatX`` as well
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176 # (``shared_y`` does exactly that). But during our computations
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177 # we need them as ints (we use labels as index, and if they are
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178 # floats it doesn't make sense) therefore instead of returning
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179 # ``shared_y`` we will have to cast it to int. This little hack
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180 # lets ous get around this issue
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181 return shared_x, T.cast(shared_y, 'int32')
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182
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183 test_set_x, test_set_y = shared_dataset(test_set)
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184 valid_set_x, valid_set_y = shared_dataset(valid_set)
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185 train_set_x, train_set_y = shared_dataset(train_set)
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186
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187 rval = [(train_set_x, train_set_y), (valid_set_x,valid_set_y), (test_set_x, test_set_y)]
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188 return rval
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189
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190
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191
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192
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193 def sgd_optimization_mnist(learning_rate=0.13, n_epochs=1000, dataset='mnist.pkl.gz'):
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194 """
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195 Demonstrate stochastic gradient descent optimization of a log-linear
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196 model
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197
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198 This is demonstrated on MNIST.
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199
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200 :type learning_rate: float
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201 :param learning_rate: learning rate used (factor for the stochastic
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202 gradient)
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203
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204 :type n_epochs: int
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205 :param n_epochs: maximal number of epochs to run the optimizer
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206
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207 :type dataset: string
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208 :param dataset: the path of the MNIST dataset file from
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209 http://www.iro.umontreal.ca/~lisa/deep/data/mnist/mnist.pkl.gz
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210
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211 """
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212 datasets = load_data(dataset)
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213
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214 train_set_x, train_set_y = datasets[0]
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215 valid_set_x, valid_set_y = datasets[1]
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216 test_set_x , test_set_y = datasets[2]
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217
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218 batch_size = 600 # size of the minibatch
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219
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220 # compute number of minibatches for training, validation and testing
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221 n_train_batches = train_set_x.value.shape[0] / batch_size
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222 n_valid_batches = valid_set_x.value.shape[0] / batch_size
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223 n_test_batches = test_set_x.value.shape[0] / batch_size
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224
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225
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226 ######################
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227 # BUILD ACTUAL MODEL #
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228 ######################
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229 print '... building the model'
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230
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231
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232 # allocate symbolic variables for the data
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233 index = T.lscalar() # index to a [mini]batch
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234 x = T.matrix('x') # the data is presented as rasterized images
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235 y = T.ivector('y') # the labels are presented as 1D vector of
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236 # [int] labels
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237
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238 # construct the logistic regression class
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239 # Each MNIST image has size 28*28
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240 classifier = LogisticRegression( input=x, n_in=28*28, n_out=10)
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241
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242 # the cost we minimize during training is the negative log likelihood of
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243 # the model in symbolic format
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244 cost = classifier.negative_log_likelihood(y)
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245
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246 # compiling a Theano function that computes the mistakes that are made by
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247 # the model on a minibatch
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248 test_model = theano.function(inputs = [index],
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249 outputs = classifier.errors(y),
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250 givens={
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251 x:test_set_x[index*batch_size:(index+1)*batch_size],
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252 y:test_set_y[index*batch_size:(index+1)*batch_size]})
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253
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254 validate_model = theano.function( inputs = [index],
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255 outputs = classifier.errors(y),
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256 givens={
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257 x:valid_set_x[index*batch_size:(index+1)*batch_size],
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258 y:valid_set_y[index*batch_size:(index+1)*batch_size]})
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259
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260 # compute the gradient of cost with respect to theta = (W,b)
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261 g_W = T.grad(cost = cost, wrt = classifier.W)
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262 g_b = T.grad(cost = cost, wrt = classifier.b)
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263
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264 # specify how to update the parameters of the model as a dictionary
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265 updates ={classifier.W: classifier.W - learning_rate*g_W,\
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266 classifier.b: classifier.b - learning_rate*g_b}
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267
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268 # compiling a Theano function `train_model` that returns the cost, but in
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269 # the same time updates the parameter of the model based on the rules
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270 # defined in `updates`
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271 train_model = theano.function(inputs = [index],
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272 outputs = cost,
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273 updates = updates,
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274 givens={
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275 x:train_set_x[index*batch_size:(index+1)*batch_size],
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276 y:train_set_y[index*batch_size:(index+1)*batch_size]})
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277
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278 ###############
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279 # TRAIN MODEL #
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280 ###############
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281 print '... training the model'
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282 # early-stopping parameters
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283 patience = 5000 # look as this many examples regardless
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284 patience_increase = 2 # wait this much longer when a new best is
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285 # found
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286 improvement_threshold = 0.995 # a relative improvement of this much is
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287 # considered significant
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288 validation_frequency = min(n_train_batches, patience/2)
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289 # go through this many
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290 # minibatche before checking the network
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291 # on the validation set; in this case we
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292 # check every epoch
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293
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294 best_params = None
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295 best_validation_loss = float('inf')
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296 test_score = 0.
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297 start_time = time.clock()
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298
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299 done_looping = False
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300 epoch = 0
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301 while (epoch < n_epochs) and (not done_looping):
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302 epoch = epoch + 1
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303 for minibatch_index in xrange(n_train_batches):
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304
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305 minibatch_avg_cost = train_model(minibatch_index)
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306 # iteration number
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307 iter = epoch * n_train_batches + minibatch_index
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308
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309 if (iter+1) % validation_frequency == 0:
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310 # compute zero-one loss on validation set
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311 validation_losses = [validate_model(i) for i in xrange(n_valid_batches)]
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312 this_validation_loss = numpy.mean(validation_losses)
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313
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314 print('epoch %i, minibatch %i/%i, validation error %f %%' % \
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315 (epoch, minibatch_index+1,n_train_batches, \
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316 this_validation_loss*100.))
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317
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318
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319 # if we got the best validation score until now
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320 if this_validation_loss < best_validation_loss:
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321 #improve patience if loss improvement is good enough
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322 if this_validation_loss < best_validation_loss * \
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323 improvement_threshold :
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324 patience = max(patience, iter * patience_increase)
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325
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326 best_validation_loss = this_validation_loss
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327 # test it on the test set
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328
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329 test_losses = [test_model(i) for i in xrange(n_test_batches)]
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330 test_score = numpy.mean(test_losses)
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331
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332 print((' epoch %i, minibatch %i/%i, test error of best '
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333 'model %f %%') % \
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334 (epoch, minibatch_index+1, n_train_batches,test_score*100.))
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335
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336 if patience <= iter :
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337 done_looping = True
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338 break
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339
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340 end_time = time.clock()
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341 print(('Optimization complete with best validation score of %f %%,'
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342 'with test performance %f %%') %
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343 (best_validation_loss * 100., test_score*100.))
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344 print ('The code ran for %f minutes' % ((end_time-start_time)/60.))
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345
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346 if __name__ == '__main__':
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347 sgd_optimization_mnist()
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348