Mercurial > ift6266
annotate baseline/mlp/v_youssouf/mlp_nist.py @ 629:75458692efba
make a makefile rule for the aistats2011_cameraready.pdf target. It use new generic rule behind.
author | Frederic Bastien <nouiz@nouiz.org> |
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date | Thu, 17 Mar 2011 14:34:52 -0400 |
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1 """ |
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2 This tutorial introduces the multilayer perceptron using Theano. |
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3 |
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4 A multilayer perceptron is a logistic regressor where |
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5 instead of feeding the input to the logistic regression you insert a |
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6 intermidiate layer, called the hidden layer, that has a nonlinear |
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7 activation function (usually tanh or sigmoid) . One can use many such |
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8 hidden layers making the architecture deep. The tutorial will also tackle |
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9 the problem of MNIST digit classification. |
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10 |
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11 .. math:: |
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12 |
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13 f(x) = G( b^{(2)} + W^{(2)}( s( b^{(1)} + W^{(1)} x))), |
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14 |
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15 References: |
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16 |
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17 - textbooks: "Pattern Recognition and Machine Learning" - |
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18 Christopher M. Bishop, section 5 |
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19 |
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20 TODO: recommended preprocessing, lr ranges, regularization ranges (explain |
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21 to do lr first, then add regularization) |
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22 |
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23 """ |
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24 __docformat__ = 'restructedtext en' |
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25 |
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26 import pdb |
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27 import numpy |
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28 import pylab |
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29 import theano |
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30 import theano.tensor as T |
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31 import time |
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32 import theano.tensor.nnet |
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33 import pylearn |
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34 import theano,pylearn.version,ift6266 |
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35 from pylearn.io import filetensor as ft |
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36 from ift6266 import datasets |
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37 |
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38 data_path = '/data/lisa/data/nist/by_class/' |
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39 |
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40 class MLP(object): |
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41 """Multi-Layer Perceptron Class |
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42 |
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43 A multilayer perceptron is a feedforward artificial neural network model |
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44 that has one layer or more of hidden units and nonlinear activations. |
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45 Intermidiate layers usually have as activation function thanh or the |
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46 sigmoid function while the top layer is a softamx layer. |
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47 """ |
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48 |
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49 |
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50 |
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51 def __init__(self, input, n_in, n_hidden, n_out,learning_rate, detection_mode=0): |
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52 """Initialize the parameters for the multilayer perceptron |
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53 |
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54 :param input: symbolic variable that describes the input of the |
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55 architecture (one minibatch) |
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56 |
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57 :param n_in: number of input units, the dimension of the space in |
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58 which the datapoints lie |
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59 |
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60 :param n_hidden: number of hidden units |
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61 |
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62 :param n_out: number of output units, the dimension of the space in |
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63 which the labels lie |
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64 |
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65 """ |
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66 |
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67 # initialize the parameters theta = (W1,b1,W2,b2) ; note that this |
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68 # example contains only one hidden layer, but one can have as many |
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69 # layers as he/she wishes, making the network deeper. The only |
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70 # problem making the network deep this way is during learning, |
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71 # backpropagation being unable to move the network from the starting |
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72 # point towards; this is where pre-training helps, giving a good |
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73 # starting point for backpropagation, but more about this in the |
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74 # other tutorials |
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75 |
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76 # `W1` is initialized with `W1_values` which is uniformely sampled |
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77 # from -6./sqrt(n_in+n_hidden) and 6./sqrt(n_in+n_hidden) |
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78 # the output of uniform if converted using asarray to dtype |
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79 # theano.config.floatX so that the code is runable on GPU |
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80 W1_values = numpy.asarray( numpy.random.uniform( \ |
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81 low = -numpy.sqrt(6./(n_in+n_hidden)), \ |
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82 high = numpy.sqrt(6./(n_in+n_hidden)), \ |
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83 size = (n_in, n_hidden)), dtype = theano.config.floatX) |
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84 # `W2` is initialized with `W2_values` which is uniformely sampled |
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85 # from -6./sqrt(n_hidden+n_out) and 6./sqrt(n_hidden+n_out) |
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86 # the output of uniform if converted using asarray to dtype |
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87 # theano.config.floatX so that the code is runable on GPU |
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88 W2_values = numpy.asarray( numpy.random.uniform( |
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89 low = -numpy.sqrt(6./(n_hidden+n_out)), \ |
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90 high= numpy.sqrt(6./(n_hidden+n_out)),\ |
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91 size= (n_hidden, n_out)), dtype = theano.config.floatX) |
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92 |
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93 self.W1 = theano.shared( value = W1_values ) |
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94 self.b1 = theano.shared( value = numpy.zeros((n_hidden,), |
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95 dtype= theano.config.floatX)) |
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96 self.W2 = theano.shared( value = W2_values ) |
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97 self.b2 = theano.shared( value = numpy.zeros((n_out,), |
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98 dtype= theano.config.floatX)) |
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99 |
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100 #include the learning rate in the classifer so |
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101 #we can modify it on the fly when we want |
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102 lr_value=learning_rate |
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103 self.lr=theano.shared(value=lr_value) |
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104 # symbolic expression computing the values of the hidden layer |
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105 self.hidden = T.tanh(T.dot(input, self.W1)+ self.b1) |
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106 |
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107 |
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108 |
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109 # symbolic expression computing the values of the top layer |
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110 if(detection_mode): |
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111 self.p_y_given_x= T.nnet.sigmoid(T.dot(self.hidden, self.W2)+self.b2) |
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112 else: |
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113 self.p_y_given_x= T.nnet.softmax(T.dot(self.hidden, self.W2)+self.b2) |
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114 |
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115 # compute prediction as class whose probability is maximal in |
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116 # symbolic form |
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117 self.y_pred = T.argmax( self.p_y_given_x, axis =1) |
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118 self.y_pred_num = T.argmax( self.p_y_given_x[0:9], axis =1) |
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119 |
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120 |
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121 |
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122 |
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123 # L1 norm ; one regularization option is to enforce L1 norm to |
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124 # be small |
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125 self.L1 = abs(self.W1).sum() + abs(self.W2).sum() |
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126 |
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127 # square of L2 norm ; one regularization option is to enforce |
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128 # square of L2 norm to be small |
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129 self.L2_sqr = (self.W1**2).sum() + (self.W2**2).sum() |
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130 |
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131 |
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132 |
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133 def negative_log_likelihood(self, y): |
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134 """Return the mean of the negative log-likelihood of the prediction |
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135 of this model under a given target distribution. |
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136 |
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137 .. math:: |
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138 |
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139 \frac{1}{|\mathcal{D}|}\mathcal{L} (\theta=\{W,b\}, \mathcal{D}) = |
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140 \frac{1}{|\mathcal{D}|}\sum_{i=0}^{|\mathcal{D}|} \log(P(Y=y^{(i)}|x^{(i)}, W,b)) \\ |
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141 \ell (\theta=\{W,b\}, \mathcal{D}) |
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142 |
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143 |
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144 :param y: corresponds to a vector that gives for each example the |
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145 :correct label |
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146 """ |
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147 return -T.mean(T.log(self.p_y_given_x)[T.arange(y.shape[0]),y]) |
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148 |
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149 |
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150 def cross_entropy(self, y): |
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151 return -T.mean(T.log(self.p_y_given_x)[T.arange(y.shape[0]),y]+T.sum(T.log(1-self.p_y_given_x), axis=1)-T.log(1-self.p_y_given_x)[T.arange(y.shape[0]),y]) |
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152 |
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153 def errors(self, y): |
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154 """Return a float representing the number of errors in the minibatch |
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155 over the total number of examples of the minibatch |
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156 """ |
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157 |
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158 # check if y has same dimension of y_pred |
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159 if y.ndim != self.y_pred.ndim: |
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160 raise TypeError('y should have the same shape as self.y_pred', |
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161 ('y', target.type, 'y_pred', self.y_pred.type)) |
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162 # check if y is of the correct datatype |
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163 if y.dtype.startswith('int'): |
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164 # the T.neq operator returns a vector of 0s and 1s, where 1 |
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165 # represents a mistake in prediction |
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166 return T.mean(T.neq(self.y_pred, y)) |
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167 else: |
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168 raise NotImplementedError() |
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169 |
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170 |
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171 def mlp_full_nist( verbose = 1,\ |
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172 adaptive_lr = 0,\ |
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173 data_set=0,\ |
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174 learning_rate=0.01,\ |
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175 L1_reg = 0.00,\ |
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176 L2_reg = 0.0001,\ |
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177 nb_max_exemples=1000000,\ |
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178 batch_size=20,\ |
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179 nb_hidden = 30,\ |
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180 nb_targets = 62, |
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181 tau=1e6,\ |
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182 lr_t2_factor=0.5,\ |
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183 detection_mode = 0,\ |
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184 reduce_label = 0): |
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185 |
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186 |
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187 configuration = [learning_rate,nb_max_exemples,nb_hidden,adaptive_lr, detection_mode, reduce_label] |
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188 |
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189 if(verbose): |
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190 print(('verbose: %i') % (verbose)) |
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191 print(('adaptive_lr: %i') % (adaptive_lr)) |
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192 print(('data_set: %i') % (data_set)) |
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193 print(('learning_rate: %f') % (learning_rate)) |
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194 print(('L1_reg: %f') % (L1_reg)) |
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195 print(('L2_reg: %f') % (L2_reg)) |
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196 print(('nb_max_exemples: %i') % (nb_max_exemples)) |
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197 print(('batch_size: %i') % (batch_size)) |
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198 print(('nb_hidden: %i') % (nb_hidden)) |
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199 print(('nb_targets: %f') % (nb_targets)) |
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200 print(('tau: %f') % (tau)) |
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201 print(('lr_t2_factor: %f') % (lr_t2_factor)) |
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202 print(('detection_mode: %i') % (detection_mode)) |
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203 print(('reduce_label: %i') % (reduce_label)) |
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204 |
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205 # define the number of output - reduce_label : merge the lower and upper case. i.e a and A will both have label 10 |
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206 if(reduce_label): |
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207 nb_targets = 36 |
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208 else: |
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209 nb_targets = 62 |
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210 |
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211 #save initial learning rate if classical adaptive lr is used |
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212 initial_lr=learning_rate |
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213 |
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214 total_validation_error_list = [] |
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215 total_train_error_list = [] |
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216 learning_rate_list=[] |
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217 best_training_error=float('inf'); |
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218 |
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219 if data_set==0: |
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220 dataset=datasets.nist_all() |
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221 |
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222 |
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223 |
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224 |
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225 ishape = (32,32) # this is the size of NIST images |
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226 |
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227 # allocate symbolic variables for the data |
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228 x = T.fmatrix() # the data is presented as rasterized images |
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229 y = T.lvector() # the labels are presented as 1D vector of |
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230 # [long int] labels |
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231 |
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232 |
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233 # construct the logistic regression class |
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234 classifier = MLP( input=x,\ |
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235 n_in=32*32,\ |
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236 n_hidden=nb_hidden,\ |
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237 n_out=nb_targets, |
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238 learning_rate=learning_rate, |
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239 detection_mode = detection_mode) |
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240 |
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241 |
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242 |
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243 |
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244 # the cost we minimize during training is the negative log likelihood of |
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245 # the model plus the regularization terms (L1 and L2); cost is expressed |
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246 # here symbolically |
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247 if(detection_mode): |
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248 cost = classifier.cross_entropy(y) \ |
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249 + L1_reg * classifier.L1 \ |
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250 + L2_reg * classifier.L2_sqr |
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251 else: |
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252 cost = classifier.negative_log_likelihood(y) \ |
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253 + L1_reg * classifier.L1 \ |
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254 + L2_reg * classifier.L2_sqr |
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255 |
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256 # compiling a theano function that computes the mistakes that are made by |
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257 # the model on a minibatch |
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258 test_model = theano.function([x,y], classifier.errors(y)) |
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259 |
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260 # compute the gradient of cost with respect to theta = (W1, b1, W2, b2) |
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261 g_W1 = T.grad(cost, classifier.W1) |
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262 g_b1 = T.grad(cost, classifier.b1) |
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263 g_W2 = T.grad(cost, classifier.W2) |
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264 g_b2 = T.grad(cost, classifier.b2) |
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265 |
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266 # specify how to update the parameters of the model as a dictionary |
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267 updates = \ |
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268 { classifier.W1: classifier.W1 - classifier.lr*g_W1 \ |
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269 , classifier.b1: classifier.b1 - classifier.lr*g_b1 \ |
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270 , classifier.W2: classifier.W2 - classifier.lr*g_W2 \ |
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271 , classifier.b2: classifier.b2 - classifier.lr*g_b2 } |
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272 |
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273 # compiling a theano function `train_model` that returns the cost, but in |
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274 # the same time updates the parameter of the model based on the rules |
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275 # defined in `updates` |
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276 train_model = theano.function([x, y], cost, updates = updates ) |
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277 |
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278 |
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279 |
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280 |
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281 |
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282 |
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283 |
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284 |
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285 |
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286 #conditions for stopping the adaptation: |
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287 #1) we have reached nb_max_exemples (this is rounded up to be a multiple of the train size) |
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288 #2) validation error is going up twice in a row(probable overfitting) |
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289 |
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290 # This means we no longer stop on slow convergence as low learning rates stopped |
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291 # too fast. |
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292 |
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293 #approximate number of samples in the training set |
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294 #this is just to have a validation frequency |
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295 #roughly proportionnal to the training set |
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296 n_minibatches = 650000/batch_size |
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297 |
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298 |
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299 patience =nb_max_exemples/batch_size #in units of minibatch |
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300 patience_increase = 2 # wait this much longer when a new best is |
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301 # found |
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302 improvement_threshold = 0.995 # a relative improvement of this much is |
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303 # considered significant |
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304 validation_frequency = n_minibatches/4 |
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305 |
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306 |
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307 |
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308 |
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309 |
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310 best_validation_loss = float('inf') |
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311 best_iter = 0 |
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312 test_score = 0. |
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313 start_time = time.clock() |
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314 time_n=0 #in unit of exemples |
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315 minibatch_index=0 |
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316 epoch=0 |
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317 temp=0 |
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318 |
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319 |
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320 |
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321 if verbose == 1: |
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322 print 'looking at most at %i exemples' %nb_max_exemples |
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323 while(minibatch_index*batch_size<nb_max_exemples): |
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324 |
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325 for x, y in dataset.train(batch_size): |
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326 |
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327 if reduce_label: |
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328 y[y > 35] = y[y > 35]-26 |
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329 minibatch_index = minibatch_index + 1 |
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330 if adaptive_lr==2: |
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331 classifier.lr.value = tau*initial_lr/(tau+time_n) |
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332 |
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333 |
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334 #train model |
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335 cost_ij = train_model(x,y) |
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336 |
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337 if (minibatch_index+1) % validation_frequency == 0: |
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338 |
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339 #save the current learning rate |
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340 learning_rate_list.append(classifier.lr.value) |
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341 |
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342 # compute the validation error |
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343 this_validation_loss = 0. |
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344 temp=0 |
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345 for xv,yv in dataset.valid(1): |
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346 if reduce_label: |
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347 yv[yv > 35] = yv[yv > 35]-26 |
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348 # sum up the errors for each minibatch |
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349 axxa=test_model(xv,yv) |
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350 this_validation_loss += axxa |
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351 temp=temp+1 |
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352 # get the average by dividing with the number of minibatches |
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353 this_validation_loss /= temp |
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354 #save the validation loss |
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355 total_validation_error_list.append(this_validation_loss) |
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356 if verbose == 1: |
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357 print(('epoch %i, minibatch %i, learning rate %f current validation error %f ') % |
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358 (epoch, minibatch_index+1,classifier.lr.value, |
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359 this_validation_loss*100.)) |
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360 |
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361 # if we got the best validation score until now |
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362 if this_validation_loss < best_validation_loss: |
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363 # save best validation score and iteration number |
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364 best_validation_loss = this_validation_loss |
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365 best_iter = minibatch_index |
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366 # reset patience if we are going down again |
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367 # so we continue exploring |
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368 patience=nb_max_exemples/batch_size |
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369 # test it on the test set |
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370 test_score = 0. |
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371 temp =0 |
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372 for xt,yt in dataset.test(batch_size): |
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373 if reduce_label: |
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374 yt[yt > 35] = yt[yt > 35]-26 |
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375 test_score += test_model(xt,yt) |
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376 temp = temp+1 |
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377 test_score /= temp |
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378 if verbose == 1: |
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379 print(('epoch %i, minibatch %i, test error of best ' |
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380 'model %f %%') % |
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381 (epoch, minibatch_index+1, |
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382 test_score*100.)) |
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383 |
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384 # if the validation error is going up, we are overfitting (or oscillating) |
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385 # stop converging but run at least to next validation |
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386 # to check overfitting or ocsillation |
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387 # the saved weights of the model will be a bit off in that case |
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388 elif this_validation_loss >= best_validation_loss: |
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389 #calculate the test error at this point and exit |
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390 # test it on the test set |
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391 # however, if adaptive_lr is true, try reducing the lr to |
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392 # get us out of an oscilliation |
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393 if adaptive_lr==1: |
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394 classifier.lr.value=classifier.lr.value*lr_t2_factor |
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395 |
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396 test_score = 0. |
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397 #cap the patience so we are allowed one more validation error |
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398 #calculation before aborting |
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399 patience = minibatch_index+validation_frequency+1 |
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400 temp=0 |
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401 for xt,yt in dataset.test(batch_size): |
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402 if reduce_label: |
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403 yt[yt > 35] = yt[yt > 35]-26 |
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404 |
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405 test_score += test_model(xt,yt) |
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406 temp=temp+1 |
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407 test_score /= temp |
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408 if verbose == 1: |
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409 print ' validation error is going up, possibly stopping soon' |
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410 print((' epoch %i, minibatch %i, test error of best ' |
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411 'model %f %%') % |
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412 (epoch, minibatch_index+1, |
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413 test_score*100.)) |
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414 |
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415 |
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416 |
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417 |
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418 if minibatch_index>patience: |
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419 print 'we have diverged' |
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420 break |
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421 |
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422 |
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423 time_n= time_n + batch_size |
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424 epoch = epoch+1 |
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425 end_time = time.clock() |
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426 if verbose == 1: |
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427 print(('Optimization complete. Best validation score of %f %% ' |
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428 'obtained at iteration %i, with test performance %f %%') % |
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429 (best_validation_loss * 100., best_iter, test_score*100.)) |
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430 print ('The code ran for %f minutes' % ((end_time-start_time)/60.)) |
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431 print minibatch_index |
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432 |
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433 #save the model and the weights |
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434 numpy.savez('model.npy', config=configuration, W1=classifier.W1.value,W2=classifier.W2.value, b1=classifier.b1.value,b2=classifier.b2.value) |
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435 numpy.savez('results.npy',config=configuration,total_train_error_list=total_train_error_list,total_validation_error_list=total_validation_error_list,\ |
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436 learning_rate_list=learning_rate_list) |
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437 |
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438 return (best_training_error*100.0,best_validation_loss * 100.,test_score*100.,best_iter*batch_size,(end_time-start_time)/60) |
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439 |
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440 def test_error(model_file): |
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441 |
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442 print((' test error on all NIST')) |
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443 # load the model |
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444 a=numpy.load(model_file) |
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445 W1=a['W1'] |
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446 W2=a['W2'] |
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447 b1=a['b1'] |
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448 b2=a['b2'] |
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449 configuration=a['config'] |
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450 #configuration = [learning_rate,nb_max_exemples,nb_hidden,adaptive_lr] |
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451 learning_rate = configuration[0] |
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452 nb_max_exemples = configuration[1] |
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453 nb_hidden = configuration[2] |
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454 adaptive_lr = configuration[3] |
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455 |
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456 if(len(configuration) == 6): |
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457 detection_mode = configuration[4] |
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458 reduce_label = configuration[5] |
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459 else: |
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460 detection_mode = 0 |
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461 reduce_label = 0 |
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462 |
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463 # define the batch size |
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464 batch_size=20 |
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465 #define the nb of target |
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466 nb_targets = 62 |
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467 |
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468 # create the mlp |
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469 ishape = (32,32) # this is the size of NIST images |
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470 |
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471 # allocate symbolic variables for the data |
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472 x = T.fmatrix() # the data is presented as rasterized images |
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473 y = T.lvector() # the labels are presented as 1D vector of |
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474 # [long int] labels |
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475 |
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476 |
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477 # construct the logistic regression class |
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478 classifier = MLP( input=x,\ |
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479 n_in=32*32,\ |
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480 n_hidden=nb_hidden,\ |
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481 n_out=nb_targets, |
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482 learning_rate=learning_rate,\ |
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483 detection_mode=detection_mode) |
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484 |
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485 |
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486 # set the weight into the model |
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487 classifier.W1.value = W1 |
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488 classifier.b1.value = b1 |
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489 classifier.W2.value = W2 |
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490 classifier.b2.value = b2 |
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491 |
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492 |
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493 # compiling a theano function that computes the mistakes that are made by |
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494 # the model on a minibatch |
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495 test_model = theano.function([x,y], classifier.errors(y)) |
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496 |
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497 # test it on the test set |
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498 |
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499 # load NIST ALL |
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500 dataset=datasets.nist_all() |
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501 test_score = 0. |
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502 temp =0 |
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503 for xt,yt in dataset.test(batch_size): |
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504 if reduce_label: |
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505 yt[yt > 35] = yt[yt > 35]-26 |
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506 test_score += test_model(xt,yt) |
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507 temp = temp+1 |
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508 test_score /= temp |
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509 |
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510 print(( ' test error NIST ALL : %f %%') %(test_score*100.0)) |
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511 |
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512 # load NIST DIGITS |
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513 dataset=datasets.nist_digits() |
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514 test_score = 0. |
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515 temp =0 |
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516 for xt,yt in dataset.test(batch_size): |
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517 if reduce_label: |
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518 yt[yt > 35] = yt[yt > 35]-26 |
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519 test_score += test_model(xt,yt) |
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520 temp = temp+1 |
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521 test_score /= temp |
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522 |
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523 print(( ' test error NIST digits : %f %%') %(test_score*100.0)) |
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524 |
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525 # load NIST lower |
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526 dataset=datasets.nist_lower() |
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527 test_score = 0. |
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528 temp =0 |
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529 for xt,yt in dataset.test(batch_size): |
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530 if reduce_label: |
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531 yt[yt > 35] = yt[yt > 35]-26 |
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532 test_score += test_model(xt,yt) |
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533 temp = temp+1 |
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534 test_score /= temp |
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535 |
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536 print(( ' test error NIST lower : %f %%') %(test_score*100.0)) |
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537 |
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538 # load NIST upper |
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539 dataset=datasets.nist_upper() |
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540 test_score = 0. |
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541 temp =0 |
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542 for xt,yt in dataset.test(batch_size): |
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543 if reduce_label: |
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544 yt[yt > 35] = yt[yt > 35]-26 |
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545 test_score += test_model(xt,yt) |
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546 temp = temp+1 |
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547 test_score /= temp |
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548 |
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549 print(( ' test error NIST upper : %f %%') %(test_score*100.0)) |
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550 |
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551 |
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552 if __name__ == '__main__': |
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553 ''' |
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554 mlp_full_nist( verbose = 1,\ |
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555 adaptive_lr = 1,\ |
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556 data_set=0,\ |
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557 learning_rate=0.5,\ |
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558 L1_reg = 0.00,\ |
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559 L2_reg = 0.0001,\ |
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560 nb_max_exemples=10000000,\ |
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561 batch_size=20,\ |
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562 nb_hidden = 500,\ |
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563 nb_targets = 62, |
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564 tau=100000,\ |
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565 lr_t2_factor=0.5) |
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566 ''' |
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567 |
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568 test_error('model.npy.npz') |
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569 |
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570 def jobman_mlp_full_nist(state,channel): |
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571 (train_error,validation_error,test_error,nb_exemples,time)=mlp_full_nist(learning_rate=state.learning_rate,\ |
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572 nb_max_exemples=state.nb_max_exemples,\ |
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573 nb_hidden=state.nb_hidden,\ |
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574 adaptive_lr=state.adaptive_lr,\ |
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575 tau=state.tau,\ |
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576 verbose = state.verbose,\ |
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577 lr_t2_factor=state.lr_t2_factor,\ |
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578 detection_mode = state.detection_mode,\ |
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579 reduce_label = state.reduce_label) |
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580 state.train_error=train_error |
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581 state.validation_error=validation_error |
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582 state.test_error=test_error |
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583 state.nb_exemples=nb_exemples |
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584 state.time=time |
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585 pylearn.version.record_versions(state,[theano,ift6266,pylearn]) |
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586 return channel.COMPLETE |
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587 |
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588 |