Mercurial > ift6266
annotate code_tutoriel/logistic_sgd.py @ 137:728e232eaf45
Added script to separate OCR data in train, validation and test sets (raw data)
| author | boulanni <nicolas_boulanger@hotmail.com> |
|---|---|
| date | Sat, 20 Feb 2010 02:12:57 -0500 |
| parents | bcc87d3e33a3 |
| children | 4bc5eeec6394 |
| rev | line source |
|---|---|
| 0 | 1 """ |
| 2 This tutorial introduces logistic regression using Theano and stochastic | |
| 3 gradient descent. | |
| 4 | |
| 5 Logistic regression is a probabilistic, linear classifier. It is parametrized | |
| 6 by a weight matrix :math:`W` and a bias vector :math:`b`. Classification is | |
| 7 done by projecting data points onto a set of hyperplanes, the distance to | |
| 8 which is used to determine a class membership probability. | |
| 9 | |
| 10 Mathematically, this can be written as: | |
| 11 | |
| 12 .. math:: | |
| 13 P(Y=i|x, W,b) &= softmax_i(W x + b) \\ | |
| 14 &= \frac {e^{W_i x + b_i}} {\sum_j e^{W_j x + b_j}} | |
| 15 | |
| 16 | |
| 17 The output of the model or prediction is then done by taking the argmax of | |
| 18 the vector whose i'th element is P(Y=i|x). | |
| 19 | |
| 20 .. math:: | |
| 21 | |
| 22 y_{pred} = argmax_i P(Y=i|x,W,b) | |
| 23 | |
| 24 | |
| 25 This tutorial presents a stochastic gradient descent optimization method | |
| 26 suitable for large datasets, and a conjugate gradient optimization method | |
| 27 that is suitable for smaller datasets. | |
| 28 | |
| 29 | |
| 30 References: | |
| 31 | |
| 32 - textbooks: "Pattern Recognition and Machine Learning" - | |
| 33 Christopher M. Bishop, section 4.3.2 | |
| 34 | |
| 35 | |
| 36 """ | |
| 37 __docformat__ = 'restructedtext en' | |
| 38 | |
| 39 | |
| 40 import numpy, cPickle, gzip | |
| 41 | |
| 42 import time | |
| 43 | |
| 44 import theano | |
| 45 import theano.tensor as T | |
| 46 | |
| 47 import theano.tensor.nnet | |
| 48 | |
| 49 | |
| 50 class LogisticRegression(object): | |
| 51 """Multi-class Logistic Regression Class | |
| 52 | |
| 53 The logistic regression is fully described by a weight matrix :math:`W` | |
| 54 and bias vector :math:`b`. Classification is done by projecting data | |
| 55 points onto a set of hyperplanes, the distance to which is used to | |
| 56 determine a class membership probability. | |
| 57 """ | |
| 58 | |
| 59 | |
| 60 | |
| 61 | |
| 62 def __init__(self, input, n_in, n_out): | |
| 63 """ Initialize the parameters of the logistic regression | |
| 64 | |
| 65 :param input: symbolic variable that describes the input of the | |
| 66 architecture (one minibatch) | |
| 67 | |
| 68 :param n_in: number of input units, the dimension of the space in | |
| 69 which the datapoints lie | |
| 70 | |
| 71 :param n_out: number of output units, the dimension of the space in | |
| 72 which the labels lie | |
| 73 | |
| 74 """ | |
| 75 | |
| 76 # initialize with 0 the weights W as a matrix of shape (n_in, n_out) | |
| 77 self.W = theano.shared( value=numpy.zeros((n_in,n_out), | |
| 78 dtype = theano.config.floatX) ) | |
| 79 # initialize the baises b as a vector of n_out 0s | |
| 80 self.b = theano.shared( value=numpy.zeros((n_out,), | |
| 81 dtype = theano.config.floatX) ) | |
| 82 | |
| 83 | |
| 84 # compute vector of class-membership probabilities in symbolic form | |
| 85 self.p_y_given_x = T.nnet.softmax(T.dot(input, self.W)+self.b) | |
| 86 | |
| 87 # compute prediction as class whose probability is maximal in | |
| 88 # symbolic form | |
| 89 self.y_pred=T.argmax(self.p_y_given_x, axis=1) | |
| 90 | |
| 91 | |
| 92 | |
| 93 | |
| 94 | |
| 95 def negative_log_likelihood(self, y): | |
| 96 """Return the mean of the negative log-likelihood of the prediction | |
| 97 of this model under a given target distribution. | |
| 98 | |
| 99 .. math:: | |
| 100 | |
| 101 \frac{1}{|\mathcal{D}|} \mathcal{L} (\theta=\{W,b\}, \mathcal{D}) = | |
| 102 \frac{1}{|\mathcal{D}|} \sum_{i=0}^{|\mathcal{D}|} \log(P(Y=y^{(i)}|x^{(i)}, W,b)) \\ | |
| 103 \ell (\theta=\{W,b\}, \mathcal{D}) | |
| 104 | |
| 105 | |
| 106 :param y: corresponds to a vector that gives for each example the | |
| 107 :correct label | |
| 108 | |
| 109 Note: we use the mean instead of the sum so that | |
| 110 the learning rate is less dependent on the batch size | |
| 111 """ | |
| 112 return -T.mean(T.log(self.p_y_given_x)[T.arange(y.shape[0]),y]) | |
| 113 | |
| 114 | |
| 115 | |
| 116 | |
| 117 | |
| 118 def errors(self, y): | |
| 119 """Return a float representing the number of errors in the minibatch | |
| 120 over the total number of examples of the minibatch ; zero one | |
| 121 loss over the size of the minibatch | |
| 122 """ | |
| 123 | |
| 124 # check if y has same dimension of y_pred | |
| 125 if y.ndim != self.y_pred.ndim: | |
| 126 raise TypeError('y should have the same shape as self.y_pred', | |
| 127 ('y', target.type, 'y_pred', self.y_pred.type)) | |
| 128 # check if y is of the correct datatype | |
| 129 if y.dtype.startswith('int'): | |
| 130 # the T.neq operator returns a vector of 0s and 1s, where 1 | |
| 131 # represents a mistake in prediction | |
| 132 return T.mean(T.neq(self.y_pred, y)) | |
| 133 else: | |
| 134 raise NotImplementedError() | |
| 135 | |
| 136 | |
| 137 | |
| 138 | |
| 139 | |
| 140 def sgd_optimization_mnist( learning_rate=0.01, n_iter=100): | |
| 141 """ | |
| 142 Demonstrate stochastic gradient descent optimization of a log-linear | |
| 143 model | |
| 144 | |
| 145 This is demonstrated on MNIST. | |
| 146 | |
| 147 :param learning_rate: learning rate used (factor for the stochastic | |
| 148 gradient | |
| 149 | |
|
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bcc87d3e33a3
adding latest tutorial code
Dumitru Erhan <dumitru.erhan@gmail.com>
parents:
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150 :param n_iter: maximal number of iterations ot run the optimizer |
| 0 | 151 |
| 152 """ | |
| 153 | |
| 154 # Load the dataset | |
| 155 f = gzip.open('mnist.pkl.gz','rb') | |
| 156 train_set, valid_set, test_set = cPickle.load(f) | |
| 157 f.close() | |
| 158 | |
| 159 # make minibatches of size 20 | |
| 160 batch_size = 20 # sized of the minibatch | |
| 161 | |
| 162 # Dealing with the training set | |
| 163 # get the list of training images (x) and their labels (y) | |
| 164 (train_set_x, train_set_y) = train_set | |
| 165 # initialize the list of training minibatches with empty list | |
| 166 train_batches = [] | |
| 167 for i in xrange(0, len(train_set_x), batch_size): | |
| 168 # add to the list of minibatches the minibatch starting at | |
| 169 # position i, ending at position i+batch_size | |
| 170 # a minibatch is a pair ; the first element of the pair is a list | |
| 171 # of datapoints, the second element is the list of corresponding | |
| 172 # labels | |
| 173 train_batches = train_batches + \ | |
| 174 [(train_set_x[i:i+batch_size], train_set_y[i:i+batch_size])] | |
| 175 | |
| 176 # Dealing with the validation set | |
| 177 (valid_set_x, valid_set_y) = valid_set | |
| 178 # initialize the list of validation minibatches | |
| 179 valid_batches = [] | |
| 180 for i in xrange(0, len(valid_set_x), batch_size): | |
| 181 valid_batches = valid_batches + \ | |
| 182 [(valid_set_x[i:i+batch_size], valid_set_y[i:i+batch_size])] | |
| 183 | |
| 184 # Dealing with the testing set | |
| 185 (test_set_x, test_set_y) = test_set | |
| 186 # initialize the list of testing minibatches | |
| 187 test_batches = [] | |
| 188 for i in xrange(0, len(test_set_x), batch_size): | |
| 189 test_batches = test_batches + \ | |
| 190 [(test_set_x[i:i+batch_size], test_set_y[i:i+batch_size])] | |
| 191 | |
| 192 | |
| 193 ishape = (28,28) # this is the size of MNIST images | |
| 194 | |
| 195 # allocate symbolic variables for the data | |
| 196 x = T.fmatrix() # the data is presented as rasterized images | |
| 197 y = T.lvector() # the labels are presented as 1D vector of | |
| 198 # [long int] labels | |
| 199 | |
| 200 # construct the logistic regression class | |
| 201 classifier = LogisticRegression( \ | |
| 202 input=x.reshape((batch_size,28*28)), n_in=28*28, n_out=10) | |
| 203 | |
| 204 # the cost we minimize during training is the negative log likelihood of | |
| 205 # the model in symbolic format | |
| 206 cost = classifier.negative_log_likelihood(y) | |
| 207 | |
| 208 # compiling a Theano function that computes the mistakes that are made by | |
| 209 # the model on a minibatch | |
| 210 test_model = theano.function([x,y], classifier.errors(y)) | |
| 211 | |
| 212 # compute the gradient of cost with respect to theta = (W,b) | |
| 213 g_W = T.grad(cost, classifier.W) | |
| 214 g_b = T.grad(cost, classifier.b) | |
| 215 | |
| 216 # specify how to update the parameters of the model as a dictionary | |
| 217 updates ={classifier.W: classifier.W - learning_rate*g_W,\ | |
| 218 classifier.b: classifier.b - learning_rate*g_b} | |
| 219 | |
| 220 # compiling a Theano function `train_model` that returns the cost, but in | |
| 221 # the same time updates the parameter of the model based on the rules | |
| 222 # defined in `updates` | |
| 223 train_model = theano.function([x, y], cost, updates = updates ) | |
| 224 | |
| 225 n_minibatches = len(train_batches) # number of minibatchers | |
| 226 | |
| 227 # early-stopping parameters | |
| 228 patience = 5000 # look as this many examples regardless | |
| 229 patience_increase = 2 # wait this much longer when a new best is | |
| 230 # found | |
| 231 improvement_threshold = 0.995 # a relative improvement of this much is | |
| 232 # considered significant | |
| 233 validation_frequency = n_minibatches # go through this many | |
| 234 # minibatche before checking the network | |
| 235 # on the validation set; in this case we | |
| 236 # check every epoch | |
| 237 | |
| 238 best_params = None | |
| 239 best_validation_loss = float('inf') | |
| 240 test_score = 0. | |
| 241 start_time = time.clock() | |
| 242 # have a maximum of `n_iter` iterations through the entire dataset | |
| 243 for iter in xrange(n_iter* n_minibatches): | |
| 244 | |
| 245 # get epoch and minibatch index | |
| 246 epoch = iter / n_minibatches | |
| 247 minibatch_index = iter % n_minibatches | |
| 248 | |
| 249 # get the minibatches corresponding to `iter` modulo | |
| 250 # `len(train_batches)` | |
| 251 x,y = train_batches[ minibatch_index ] | |
| 252 cost_ij = train_model(x,y) | |
| 253 | |
| 254 if (iter+1) % validation_frequency == 0: | |
| 255 # compute zero-one loss on validation set | |
| 256 this_validation_loss = 0. | |
| 257 for x,y in valid_batches: | |
| 258 # sum up the errors for each minibatch | |
| 259 this_validation_loss += test_model(x,y) | |
| 260 # get the average by dividing with the number of minibatches | |
| 261 this_validation_loss /= len(valid_batches) | |
| 262 | |
| 263 print('epoch %i, minibatch %i/%i, validation error %f %%' % \ | |
| 264 (epoch, minibatch_index+1,n_minibatches, \ | |
| 265 this_validation_loss*100.)) | |
| 266 | |
| 267 | |
| 268 # if we got the best validation score until now | |
| 269 if this_validation_loss < best_validation_loss: | |
| 270 #improve patience if loss improvement is good enough | |
| 271 if this_validation_loss < best_validation_loss * \ | |
| 272 improvement_threshold : | |
| 273 patience = max(patience, iter * patience_increase) | |
| 274 | |
| 275 best_validation_loss = this_validation_loss | |
| 276 # test it on the test set | |
| 277 | |
| 278 test_score = 0. | |
| 279 for x,y in test_batches: | |
| 280 test_score += test_model(x,y) | |
| 281 test_score /= len(test_batches) | |
| 282 print((' epoch %i, minibatch %i/%i, test error of best ' | |
| 283 'model %f %%') % \ | |
| 284 (epoch, minibatch_index+1, n_minibatches,test_score*100.)) | |
| 285 | |
| 286 if patience <= iter : | |
| 287 break | |
| 288 | |
| 289 end_time = time.clock() | |
| 290 print(('Optimization complete with best validation score of %f %%,' | |
| 291 'with test performance %f %%') % | |
| 292 (best_validation_loss * 100., test_score*100.)) | |
| 293 print ('The code ran for %f minutes' % ((end_time-start_time)/60.)) | |
| 294 | |
| 295 | |
| 296 | |
| 297 | |
| 298 | |
| 299 | |
| 300 | |
| 301 if __name__ == '__main__': | |
| 302 sgd_optimization_mnist() | |
| 303 |