annotate scripts/stacked_dae/stacked_convolutional_dae.py @ 162:050c7ff6b449

Do not commit syntax errors. (in test.py)
author Arnaud Bergeron <abergeron@gmail.com>
date Thu, 25 Feb 2010 18:12:18 -0500
parents 128507ac4edf
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128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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1 import numpy
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2 import theano
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3 import time
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4 import theano.tensor as T
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5 from theano.tensor.shared_randomstreams import RandomStreams
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6 import theano.sandbox.softsign
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7
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8 from theano.tensor.signal import downsample
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9 from theano.tensor.nnet import conv
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10 import gzip
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11 import cPickle
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12
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13
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14 class LogisticRegression(object):
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15
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16 def __init__(self, input, n_in, n_out):
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17
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18 self.W = theano.shared( value=numpy.zeros((n_in,n_out),
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19 dtype = theano.config.floatX) )
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20
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21 self.b = theano.shared( value=numpy.zeros((n_out,),
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22 dtype = theano.config.floatX) )
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23
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24 self.p_y_given_x = T.nnet.softmax(T.dot(input, self.W)+self.b)
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27 self.y_pred=T.argmax(self.p_y_given_x, axis=1)
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28
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29 self.params = [self.W, self.b]
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30
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31 def negative_log_likelihood(self, y):
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32 return -T.mean(T.log(self.p_y_given_x)[T.arange(y.shape[0]),y])
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33
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34 def MSE(self, y):
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35 return -T.mean(abs((self.p_y_given_x)[T.arange(y.shape[0]),y]-y)**2)
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36
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37 def errors(self, y):
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38 if y.ndim != self.y_pred.ndim:
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39 raise TypeError('y should have the same shape as self.y_pred',
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40 ('y', target.type, 'y_pred', self.y_pred.type))
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42
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43 if y.dtype.startswith('int'):
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44 return T.mean(T.neq(self.y_pred, y))
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45 else:
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46 raise NotImplementedError()
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47
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48
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49 class SigmoidalLayer(object):
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50 def __init__(self, rng, input, n_in, n_out):
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51
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52 self.input = input
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53
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54 W_values = numpy.asarray( rng.uniform( \
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55 low = -numpy.sqrt(6./(n_in+n_out)), \
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56 high = numpy.sqrt(6./(n_in+n_out)), \
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57 size = (n_in, n_out)), dtype = theano.config.floatX)
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58 self.W = theano.shared(value = W_values)
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59
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60 b_values = numpy.zeros((n_out,), dtype= theano.config.floatX)
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61 self.b = theano.shared(value= b_values)
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62
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63 self.output = T.tanh(T.dot(input, self.W) + self.b)
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64 self.params = [self.W, self.b]
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65
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66 class dA_conv(object):
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67
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68 def __init__(self, corruption_level = 0.1, input = None, shared_W = None,\
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69 shared_b = None, filter_shape = None, image_shape = None, poolsize = (2,2)):
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70
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71 theano_rng = RandomStreams()
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72
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73 fan_in = numpy.prod(filter_shape[1:])
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74 fan_out = filter_shape[0] * numpy.prod(filter_shape[2:])
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75
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76 center = theano.shared(value = 1, name="center")
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77 scale = theano.shared(value = 2, name="scale")
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78
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79 if shared_W != None and shared_b != None :
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80 self.W = shared_W
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81 self.b = shared_b
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82 else:
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83 initial_W = numpy.asarray( numpy.random.uniform( \
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84 low = -numpy.sqrt(6./(fan_in+fan_out)), \
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85 high = numpy.sqrt(6./(fan_in+fan_out)), \
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86 size = filter_shape), dtype = theano.config.floatX)
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87 initial_b = numpy.zeros((filter_shape[0],), dtype= theano.config.floatX)
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88
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89
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90 self.W = theano.shared(value = initial_W, name = "W")
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91 self.b = theano.shared(value = initial_b, name = "b")
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92
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93
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94 initial_b_prime= numpy.zeros((filter_shape[1],))
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95
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96 self.W_prime=T.dtensor4('W_prime')
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97
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98 self.b_prime = theano.shared(value = initial_b_prime, name = "b_prime")
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99
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100 self.x = input
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101
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102 self.tilde_x = theano_rng.binomial( self.x.shape, 1, 1 - corruption_level) * self.x
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103
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104 conv1_out = conv.conv2d(self.tilde_x, self.W, \
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105 filter_shape=filter_shape, \
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106 image_shape=image_shape, border_mode='valid')
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107
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108
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109 self.y = T.tanh(conv1_out + self.b.dimshuffle('x', 0, 'x', 'x'))
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110
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111
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112 da_filter_shape = [ filter_shape[1], filter_shape[0], filter_shape[2],\
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113 filter_shape[3] ]
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114 da_image_shape = [ image_shape[0],filter_shape[0],image_shape[2]-filter_shape[2]+1, \
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115 image_shape[3]-filter_shape[3]+1 ]
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116 initial_W_prime = numpy.asarray( numpy.random.uniform( \
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117 low = -numpy.sqrt(6./(fan_in+fan_out)), \
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118 high = numpy.sqrt(6./(fan_in+fan_out)), \
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119 size = da_filter_shape), dtype = theano.config.floatX)
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120 self.W_prime = theano.shared(value = initial_W_prime, name = "W_prime")
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121
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122 #import pdb;pdb.set_trace()
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123
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124 conv2_out = conv.conv2d(self.y, self.W_prime, \
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125 filter_shape = da_filter_shape, image_shape = da_image_shape ,\
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126 border_mode='full')
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127
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128 self.z = (T.tanh(conv2_out + self.b_prime.dimshuffle('x', 0, 'x', 'x'))+center) / scale
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129
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130 scaled_x = (self.x + center) / scale
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131
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132 self.L = - T.sum( scaled_x*T.log(self.z) + (1-scaled_x)*T.log(1-self.z), axis=1 )
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133
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134 self.cost = T.mean(self.L)
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135
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136 self.params = [ self.W, self.b, self.b_prime ]
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137
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138
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139
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140 class LeNetConvPoolLayer(object):
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141 def __init__(self, rng, input, filter_shape, image_shape, poolsize=(2,2)):
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142 assert image_shape[1]==filter_shape[1]
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143 self.input = input
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144
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145 W_values = numpy.zeros(filter_shape, dtype=theano.config.floatX)
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146 self.W = theano.shared(value = W_values)
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147
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148 b_values = numpy.zeros((filter_shape[0],), dtype= theano.config.floatX)
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149 self.b = theano.shared(value= b_values)
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150
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151 conv_out = conv.conv2d(input, self.W,
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152 filter_shape=filter_shape, image_shape=image_shape)
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153
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154
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155 fan_in = numpy.prod(filter_shape[1:])
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156 fan_out = filter_shape[0] * numpy.prod(filter_shape[2:]) / numpy.prod(poolsize)
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157
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158 W_bound = numpy.sqrt(6./(fan_in + fan_out))
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159 self.W.value = numpy.asarray(
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160 rng.uniform(low=-W_bound, high=W_bound, size=filter_shape),
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161 dtype = theano.config.floatX)
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162
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163
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164 pooled_out = downsample.max_pool2D(conv_out, poolsize, ignore_border=True)
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165
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166 self.output = T.tanh(pooled_out + self.b.dimshuffle('x', 0, 'x', 'x'))
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167 self.params = [self.W, self.b]
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168
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169
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170 class SdA():
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171 def __init__(self, input, n_ins_conv, n_ins_mlp, train_set_x, train_set_y, batch_size, \
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172 conv_hidden_layers_sizes, mlp_hidden_layers_sizes, corruption_levels, \
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173 rng, n_out, pretrain_lr, finetune_lr):
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174
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175 self.layers = []
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176 self.pretrain_functions = []
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177 self.params = []
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178 self.conv_n_layers = len(conv_hidden_layers_sizes)
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179 self.mlp_n_layers = len(mlp_hidden_layers_sizes)
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180
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181 index = T.lscalar() # index to a [mini]batch
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182 self.x = T.dmatrix('x') # the data is presented as rasterized images
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183 self.y = T.ivector('y') # the labels are presented as 1D vector of
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184
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185
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186
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187 for i in xrange( self.conv_n_layers ):
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188
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189 filter_shape=conv_hidden_layers_sizes[i][0]
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190 image_shape=conv_hidden_layers_sizes[i][1]
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191 max_poolsize=conv_hidden_layers_sizes[i][2]
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192
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193 if i == 0 :
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194 layer_input=self.x.reshape((batch_size,1,28,28))
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195 else:
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196 layer_input=self.layers[-1].output
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197
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198 layer = LeNetConvPoolLayer(rng, input=layer_input, \
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199 image_shape=image_shape, \
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200 filter_shape=filter_shape,poolsize=max_poolsize)
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201 print 'Convolutional layer '+str(i+1)+' created'
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202
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203 self.layers += [layer]
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204 self.params += layer.params
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205
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206 da_layer = dA_conv(corruption_level = corruption_levels[0],\
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207 input = layer_input, \
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208 shared_W = layer.W, shared_b = layer.b,\
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209 filter_shape = filter_shape , image_shape = image_shape )
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210
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211
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212 gparams = T.grad(da_layer.cost, da_layer.params)
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213
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214 updates = {}
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215 for param, gparam in zip(da_layer.params, gparams):
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216 updates[param] = param - gparam * pretrain_lr
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217
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218
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219 update_fn = theano.function([index], da_layer.cost, \
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220 updates = updates,
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221 givens = {
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222 self.x : train_set_x[index*batch_size:(index+1)*batch_size]} )
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223
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224 self.pretrain_functions += [update_fn]
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225
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226 for i in xrange( self.mlp_n_layers ):
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227 if i == 0 :
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228 input_size = n_ins_mlp
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229 else:
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230 input_size = mlp_hidden_layers_sizes[i-1]
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231
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232 if i == 0 :
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233 if len( self.layers ) == 0 :
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234 layer_input=self.x
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235 else :
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236 layer_input = self.layers[-1].output.flatten(2)
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237 else:
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238 layer_input = self.layers[-1].output
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239
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240 layer = SigmoidalLayer(rng, layer_input, input_size,
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241 mlp_hidden_layers_sizes[i] )
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242
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243 self.layers += [layer]
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244 self.params += layer.params
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245
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246
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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247 print 'MLP layer '+str(i+1)+' created'
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248
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249 self.logLayer = LogisticRegression(input=self.layers[-1].output, \
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250 n_in=mlp_hidden_layers_sizes[-1], n_out=n_out)
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251 self.params += self.logLayer.params
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252
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253 cost = self.logLayer.negative_log_likelihood(self.y)
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254
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255 gparams = T.grad(cost, self.params)
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256 updates = {}
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257
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258 for param,gparam in zip(self.params, gparams):
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259 updates[param] = param - gparam*finetune_lr
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260
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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261 self.finetune = theano.function([index], cost,
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262 updates = updates,
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263 givens = {
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264 self.x : train_set_x[index*batch_size:(index+1)*batch_size],
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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265 self.y : train_set_y[index*batch_size:(index+1)*batch_size]} )
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266
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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267
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268 self.errors = self.logLayer.errors(self.y)
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269
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270
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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271
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272 def sgd_optimization_mnist( learning_rate=0.1, pretraining_epochs = 2, \
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273 pretrain_lr = 0.01, training_epochs = 1000, \
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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274 dataset='mnist.pkl.gz'):
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275
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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276 f = gzip.open(dataset,'rb')
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277 train_set, valid_set, test_set = cPickle.load(f)
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278 f.close()
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279
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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280
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281 def shared_dataset(data_xy):
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282 data_x, data_y = data_xy
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283 shared_x = theano.shared(numpy.asarray(data_x, dtype=theano.config.floatX))
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284 shared_y = theano.shared(numpy.asarray(data_y, dtype=theano.config.floatX))
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285 return shared_x, T.cast(shared_y, 'int32')
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286
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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287
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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288 test_set_x, test_set_y = shared_dataset(test_set)
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289 valid_set_x, valid_set_y = shared_dataset(valid_set)
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290 train_set_x, train_set_y = shared_dataset(train_set)
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291
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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292 batch_size = 500 # size of the minibatch
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293
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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294
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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295 n_train_batches = train_set_x.value.shape[0] / batch_size
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296 n_valid_batches = valid_set_x.value.shape[0] / batch_size
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297 n_test_batches = test_set_x.value.shape[0] / batch_size
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298
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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299 # allocate symbolic variables for the data
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300 index = T.lscalar() # index to a [mini]batch
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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301 x = T.matrix('x') # the data is presented as rasterized images
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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302 y = T.ivector('y') # the labels are presented as 1d vector of
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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303 # [int] labels
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304 layer0_input = x.reshape((batch_size,1,28,28))
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305
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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306
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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307 # Setup the convolutional layers with their DAs(add as many as you want)
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308 corruption_levels = [ 0.2, 0.2, 0.2]
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309 rng = numpy.random.RandomState(1234)
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310 ker1=2
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311 ker2=2
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312 conv_layers=[]
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313 conv_layers.append([[ker1,1,5,5], [batch_size,1,28,28], [2,2] ])
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314 conv_layers.append([[ker2,ker1,5,5], [batch_size,ker1,12,12], [2,2] ])
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315
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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316 # Setup the MLP layers of the network
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317 mlp_layers=[500]
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318
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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319 network = SdA(input = layer0_input, n_ins_conv = 28*28, n_ins_mlp = ker2*4*4, \
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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320 train_set_x = train_set_x, train_set_y = train_set_y, batch_size = batch_size,
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321 conv_hidden_layers_sizes = conv_layers, \
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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322 mlp_hidden_layers_sizes = mlp_layers, \
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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323 corruption_levels = corruption_levels , n_out = 10, \
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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324 rng = rng , pretrain_lr = pretrain_lr , finetune_lr = learning_rate )
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325
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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326 test_model = theano.function([index], network.errors,
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327 givens = {
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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328 network.x: test_set_x[index*batch_size:(index+1)*batch_size],
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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329 network.y: test_set_y[index*batch_size:(index+1)*batch_size]})
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330
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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331 validate_model = theano.function([index], network.errors,
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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332 givens = {
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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333 network.x: valid_set_x[index*batch_size:(index+1)*batch_size],
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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334 network.y: valid_set_y[index*batch_size:(index+1)*batch_size]})
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335
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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336
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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337
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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338 start_time = time.clock()
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339 for i in xrange(len(network.layers)-len(mlp_layers)):
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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340 for epoch in xrange(pretraining_epochs):
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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341 for batch_index in xrange(n_train_batches):
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342 c = network.pretrain_functions[i](batch_index)
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343 print 'pre-training convolution layer %i, epoch %d, cost '%(i,epoch),c
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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344
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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345 patience = 10000 # look as this many examples regardless
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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346 patience_increase = 2. # WAIT THIS MUCH LONGER WHEN A NEW BEST IS
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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347 # FOUND
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348 improvement_threshold = 0.995 # a relative improvement of this much is
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349
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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350 validation_frequency = min(n_train_batches, patience/2)
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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351
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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352
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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353 best_params = None
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354 best_validation_loss = float('inf')
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355 test_score = 0.
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356 start_time = time.clock()
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357
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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358 done_looping = False
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359 epoch = 0
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360
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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361 while (epoch < training_epochs) and (not done_looping):
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362 epoch = epoch + 1
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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363 for minibatch_index in xrange(n_train_batches):
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364
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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365 cost_ij = network.finetune(minibatch_index)
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366 iter = epoch * n_train_batches + minibatch_index
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367
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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368 if (iter+1) % validation_frequency == 0:
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369
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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370 validation_losses = [validate_model(i) for i in xrange(n_valid_batches)]
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371 this_validation_loss = numpy.mean(validation_losses)
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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372 print('epoch %i, minibatch %i/%i, validation error %f %%' % \
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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373 (epoch, minibatch_index+1, n_train_batches, \
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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374 this_validation_loss*100.))
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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375
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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376
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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377 # if we got the best validation score until now
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378 if this_validation_loss < best_validation_loss:
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379
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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380 #improve patience if loss improvement is good enough
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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381 if this_validation_loss < best_validation_loss * \
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Owner <salahmeister@gmail.com>
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382 improvement_threshold :
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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383 patience = max(patience, iter * patience_increase)
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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384
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
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385 # save best validation score and iteration number
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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386 best_validation_loss = this_validation_loss
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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387 best_iter = iter
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
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388
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
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389 # test it on the test set
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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parents:
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390 test_losses = [test_model(i) for i in xrange(n_test_batches)]
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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parents:
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391 test_score = numpy.mean(test_losses)
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
parents:
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392 print((' epoch %i, minibatch %i/%i, test error of best '
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
parents:
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393 'model %f %%') %
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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parents:
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394 (epoch, minibatch_index+1, n_train_batches,
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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395 test_score*100.))
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
parents:
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396
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
parents:
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397
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
parents:
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398 if patience <= iter :
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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parents:
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399 done_looping = True
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
parents:
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400 break
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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parents:
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401
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
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402 end_time = time.clock()
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
parents:
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403 print(('Optimization complete with best validation score of %f %%,'
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
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404 'with test performance %f %%') %
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
parents:
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405 (best_validation_loss * 100., test_score*100.))
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
parents:
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406 print ('The code ran for %f minutes' % ((end_time-start_time)/60.))
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
parents:
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407
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
parents:
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408
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
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409
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
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410
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
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411
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
parents:
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412
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
Owner <salahmeister@gmail.com>
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413 if __name__ == '__main__':
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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414 sgd_optimization_mnist()
128507ac4edf Initial commit for the stacked convolutional denoising autoencoders
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415